ENSDARG00000033738


Danio rerio

Features
Gene ID: ENSDARG00000033738
  
Biological name :zgc:153867
  
Synonyms : zgc:153867
  
Possible biological names infered from orthology : MYL6 / MYL6B / myosin light chain 6 / myosin light chain 6B / myosin, light polypeptide 6, alkali, smooth muscle and non-muscle / P14649 / P60660 / Q60605 / Q8CI43
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 28374458
Gene end: 28388513
  
Corresponding Affymetrix probe sets: Dr.962.1.S1_at (Zebrafish Array)   NM_213638_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000117096
Ensembl peptide - ENSDARP00000151604
Ensembl peptide - ENSDARP00000139613
Ensembl peptide - ENSDARP00000120093
Ensembl peptide - ENSDARP00000117369
Ensembl peptide - ENSDARP00000025083
Ensembl peptide - ENSDARP00000106177
Ensembl peptide - ENSDARP00000115100
Ensembl peptide - ENSDARP00000116185
NCBI entrez gene - 337226     See in Manteia.
RefSeq - NM_213638
RefSeq Peptide - NP_998803
swissprot - E9QF73
swissprot - E9QCD6
swissprot - Q6TNS5
swissprot - E9QIL0
swissprot - E9QG86
ZFIN ID - ZDB-GENE-030131-9170
Ensembl - ENSDARG00000033738
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MYL6ENSGALG00000035086Gallus gallus
 MYL6ENSG00000092841Homo sapiens
 MYL6BENSG00000196465Homo sapiens
 Myl6ENSMUSG00000090841Mus musculus
 Myl6bENSMUSG00000039824Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cmlc1 / cardiac myosin light chain-1 / MYL4* / P12829* / myosin light chain 4* / Mus musculus myosin, light polypeptide 4 (Myl4), transcript variant 2, mRNA.*ENSDARG0000003297661
myl6 / myosin, light chain 6, alkali, smooth muscle and non-muscle / MYL6B* / Q8CI43* / P14649* / P60660* / Q60605* / myosin light chain 6* / myosin light chain 6B* / myosin, light polypept...ENSDARG0000000849460
myl4 / myosin, light chain 4, alkali; atrial, embryonic / P12829* / myosin light chain 4* / Mus musculus myosin, light polypeptide 4 (Myl4), transcript variant 2, mRNA.*ENSDARG0000001151960
myl13 / myosin, light chain 13ENSDARG0000004224558
zgc:163073 / MYL3* / P08590* / P09542* / myosin light chain 3*ENSDARG0000009971256
myl1 / myosin, light chain 1, alkali; skeletal, fast / P05977* / P05976* / myosin light chain 1* / Myosin light chain 1/3, skeletal muscle isoform *ENSDARG0000001419652
mylz3 / myosin, light polypeptide 3, skeletal muscle / MYL1* / P05977* / P05976* / myosin light chain 1* / Myosin light chain 1/3, skeletal muscle isoform *ENSDARG0000001744143


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Smooth Muscle Contraction
RHO GTPases activate PAKs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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