ENSDARG00000034375


Danio rerio

Features
Gene ID: ENSDARG00000034375
  
Biological name :chst11
  
Synonyms : carbohydrate (chondroitin 4) sulfotransferase 11 / chst11
  
Possible biological names infered from orthology : carbohydrate sulfotransferase 11 / Q9JME2 / Q9NPF2
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 9103182
Gene end: 9173552
  
Corresponding Affymetrix probe sets: DrAffx.1.49.S1_at (Zebrafish Array)   NM_212824_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000042962
NCBI entrez gene - 404232     See in Manteia.
RefSeq - NM_212824
RefSeq Peptide - NP_997989
swissprot - F1REP6
ZFIN ID - ZDB-GENE-040315-1
Ensembl - ENSDARG00000034375
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHST11ENSGALG00000030607Gallus gallus
 CHST11ENSG00000171310Homo sapiens
 Chst11ENSMUSG00000034612Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHST13 / si:ch211-236h17.3 / Q8NET6* / carbohydrate sulfotransferase 13* / carbohydrate (chondroitin 4) sulfotransferase 13*ENSDARG0000000401857
chst12b / carbohydrate (chondroitin 4) sulfotransferase 12bENSDARG0000007719837
chst12a / carbohydrate (chondroitin 4) sulfotransferase 12a / CHST12* / Q99LL3* / Q9NRB3* / carbohydrate sulfotransferase 12*ENSDARG0000002878634
si:ch211-269c21.2 / CHST8* / Q9H2A9* / carbohydrate sulfotransferase 8*ENSDARG0000007456034
si:dkey-26i13.7ENSDARG0000009224233
chst12b / si:dkey-26i13.4ENSDARG0000009498133
si:dkey-26i13.3ENSDARG0000009548233
si:dkey-26i13.6 / si:dkey-26i13.7ENSDARG0000009220032
si:dkey-26i13.5ENSDARG0000009363632
chst14 / Q805E5 / carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 / Q80V53* / Q8NCH0* / carbohydrate sulfotransferase 14*ENSDARG0000004301130
chst10 / Q6AXM1 / carbohydrate sulfotransferase 10 / O43529*ENSDARG0000003163228


Protein motifs (from Interpro)
Interpro ID Name
 IPR005331  Sulfotransferase
 IPR018011  Carbohydrate sulfotransferase 8-10


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005975 carbohydrate metabolic process IEA
 biological_processGO:0016051 carbohydrate biosynthetic process IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008146 sulfotransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
Chondroitin sulfate biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism decreased size , abnormal
whole organism lethal (sensu genetics) , abnormal
Show

 ZFA:0001115 trunk trunk bent , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved , abnormal
post-vent region kinked , abnormal
Show

 ZFA:0009052 motor neuron motor neuron axon misrouted , abnormal
motor neuron axon truncated , abnormal
motor neuron axon branchiness , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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