ENSDARG00000028786


Danio rerio

Features
Gene ID: ENSDARG00000028786
  
Biological name :chst12a
  
Synonyms : carbohydrate (chondroitin 4) sulfotransferase 12a / chst12a
  
Possible biological names infered from orthology : carbohydrate sulfotransferase 12 / CHST12 / Q99LL3 / Q9NRB3
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 41726360
Gene end: 41732947
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000129589
Ensembl peptide - ENSDARP00000153749
Ensembl peptide - ENSDARP00000049006
NCBI entrez gene - 407076     See in Manteia.
RefSeq - NM_213547
RefSeq Peptide - NP_998712
swissprot - B3DFJ6
swissprot - F6PBU2
ZFIN ID - ZDB-GENE-081022-13
Ensembl - ENSDARG00000028786
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHST12ENSGALG00000004276Gallus gallus
 CHST12ENSG00000136213Homo sapiens
 Chst12ENSMUSG00000036599Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
chst12b / carbohydrate (chondroitin 4) sulfotransferase 12bENSDARG0000007719850
chst12b / si:dkey-26i13.4ENSDARG0000009498146
si:dkey-26i13.7ENSDARG0000009224245
si:dkey-26i13.3ENSDARG0000009548245
si:dkey-26i13.6 / si:dkey-26i13.7ENSDARG0000009220044
si:dkey-26i13.5ENSDARG0000009363644
CHST13 / si:ch211-236h17.3 / Q8NET6* / carbohydrate sulfotransferase 13* / carbohydrate (chondroitin 4) sulfotransferase 13*ENSDARG0000000401828
chst11 / carbohydrate (chondroitin 4) sulfotransferase 11 / Q9JME2* / Q9NPF2* / carbohydrate sulfotransferase 11*ENSDARG0000003437528
chst10 / Q6AXM1 / carbohydrate sulfotransferase 10 / O43529*ENSDARG0000003163223
si:ch211-269c21.2 / CHST8* / Q9H2A9* / carbohydrate sulfotransferase 8*ENSDARG0000007456023
chst14 / Q805E5 / carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 / Q80V53* / Q8NCH0* / carbohydrate sulfotransferase 14*ENSDARG0000004301122


Protein motifs (from Interpro)
Interpro ID Name
 IPR005331  Sulfotransferase
 IPR018011  Carbohydrate sulfotransferase 8-10


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005975 carbohydrate metabolic process IEA
 biological_processGO:0016051 carbohydrate biosynthetic process IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008146 sulfotransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
Chondroitin sulfate biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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