ENSDARG00000040926


Danio rerio

Features
Gene ID: ENSDARG00000040926
  
Biological name :nr2f2
  
Synonyms : nr2f2 / nuclear receptor subfamily 2, group F, member 2
  
Possible biological names infered from orthology : P24468 / P43135
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 23868650
Gene end: 24023013
  
Corresponding Affymetrix probe sets: Dr.3986.1.S1_at (Zebrafish Array)   Dr.3986.1.S2_at (Zebrafish Array)   NM_131183_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000059975
Ensembl peptide - ENSDARP00000107285
Ensembl peptide - ENSDARP00000115762
NCBI entrez gene - 30424     See in Manteia.
RefSeq - NM_131183
RefSeq Peptide - NP_571258
swissprot - F1Q6P8
swissprot - B3DGQ7
swissprot - Q91430
ZFIN ID - ZDB-GENE-990415-252
Ensembl - ENSDARG00000040926
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NR2F2ENSGALG00000007000Gallus gallus
 NR2F2ENSG00000185551Homo sapiens
 Nr2f2ENSMUSG00000030551Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q06725 / nr2f1a / nuclear receptor subfamily 2, group F, member 1a / NR2F1* / P10589* / nuclear receptor subfamily 2 group F member 1*ENSDARG0000005269583
nr2f1b / Q6PH18 / nuclear receptor subfamily 2, group F, member 1bENSDARG0000001716876
nr2f5 / Q06726 / nuclear receptor subfamily 2, group F, member 5ENSDARG0000003317272
nr2f6b / nuclear receptor subfamily 2, group F, member 6b / NR2F6* / P43136* / P10588* / nuclear receptor subfamily 2 group F member 6*ENSDARG0000000316559
nr2f6a / nuclear receptor subfamily 2, group F, member 6a / NR2F6* / P43136* / P10588* / nuclear receptor subfamily 2 group F member 6*ENSDARG0000000360758
rxraa / retinoid X receptor, alpha a / RXRA* / P19793* / P28700* / retinoid X receptor alpha*ENSDARG0000005773737
rxrbb / retinoid x receptor, beta b / RXRB* / P28702* / P28704* / retinoid X receptor beta*ENSDARG0000000200636
rxrgb / Q6DHP9 / retinoid X receptor, gamma b / RXRG* / P28705* / P48443* / retinoid X receptor gamma* / Retinoic acid receptor RXR-gamma *ENSDARG0000000469736
rxrab / retinoid x receptor, alpha b / RXRA* / P19793* / P28700* / retinoid X receptor alpha*ENSDARG0000003512735
rxrba / Q7SYN5 / retinoid x receptor, beta a / RXRB* / P28704* / P28702* / retinoid X receptor beta*ENSDARG0000007895435
nr2c2 / nuclear receptor subfamily 2, group C, member 2 / P49116* / P49117*ENSDARG0000004247734
nr2e3 / nuclear receptor subfamily 2, group E, member 3 / Q9QXZ7* / Q9Y5X4* / Photoreceptor-specific nuclear receptor *ENSDARG0000004590434
nr2c1 / nuclear receptor subfamily 2, group C, member 1 / P13056* / Q505F1*ENSDARG0000004552732
nr2e1 / nuclear receptor subfamily 2, group E, member 1 / Q64104* / Q9Y466*ENSDARG0000001710731
hnf4a / hepatocyte nuclear factor 4, alpha / P41235* / P49698*ENSDARG0000002149431
hnf4g / hepatocyte nuclear factor 4, gamma / Q14541*ENSDARG0000007156529
CABZ01057488.1ENSDARG0000010474222


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003068  Transcription factor COUP
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001946 lymphangiogenesis IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0060838 lymphatic endothelial cell fate commitment IMP
 biological_processGO:0060841 venous blood vessel development IMP
 biological_processGO:0060852 regulation of transcription involved in venous endothelial cell fate commitment IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0004879 nuclear receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000014 dorsal aorta dorsal aorta fused with posterior cardinal vein , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000180 caudal vein caudal vein absent , abnormal
caudal vein malformed , abnormal
Show

 ZFA:0000477 posterior cardinal vein posterior cardinal vein regulation of transcription involved in venous endothelial cell fate commitment process quality , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel branchiness , abnormal
Show

 ZFA:0001286 caudal vein plexus caudal vein plexus malformed , abnormal
Show

 ZFA:0005024 trunk vasculature trunk vasculature non-functional , abnormal
Show

 ZFA:0005037 post-vent vasculature post-vent vasculature structure , abnormal
Show

 ZFA:0005110 thoracic duct thoracic duct immature , abnormal
thoracic duct morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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