ENSDARG00000041570


Danio rerio

Features
Gene ID: ENSDARG00000041570
  
Biological name :mrpl39
  
Synonyms : mitochondrial ribosomal protein L39 / mrpl39
  
Possible biological names infered from orthology : 39S ribosomal protein L39, mitochondrial / Q9JKF7 / Q9NYK5
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 532766
Gene end: 591331
  
Corresponding Affymetrix probe sets: Dr.23754.1.S1_at (Zebrafish Array)   NM_199915_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000060943
Ensembl peptide - ENSDARP00000119574
Ensembl peptide - ENSDARP00000151560
NCBI entrez gene - 101885540     See in Manteia.
NCBI entrez gene - 334588     See in Manteia.
RefSeq - NM_001328008
RefSeq - NM_199915
RefSeq Peptide - NP_001314937
RefSeq Peptide - NP_956209
swissprot - Q7T3F9
ZFIN ID - ZDB-GENE-030131-6520
Ensembl - ENSDARG00000041570
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MRPL39ENSGALG00000015742Gallus gallus
 MRPL39ENSG00000154719Homo sapiens
 Mrpl39ENSMUSG00000022889Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tars / threonyl-tRNA synthetase / P26639* / Q9D0R2* / Threonine--tRNA ligase, cytoplasmic *ENSDARG0000001325019
LO017852.1 / TARS2* / Q9BW92* / threonyl-tRNA synthetase 2, mitochondrial*ENSDARG000000753852
tarsl2 / threonyl-tRNA synthetase-like 2 / A2RTX5* / Q8BLY2* / Probable threonine--tRNA ligase 2, cytoplasmic *ENSDARG000000927742


Protein motifs (from Interpro)
Interpro ID Name
 IPR012675  Beta-grasp domain superfamily
 IPR018163  Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily
 IPR025212  Centromere protein Q


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005840 ribosome IEA
 molecular_functionGO:0000166 nucleotide binding IEA


Pathways (from Reactome)
Pathway description
Mitochondrial translation elongation
Mitochondrial translation termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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