ENSDARG00000041581


Danio rerio

Features
Gene ID: ENSDARG00000041581
  
Biological name :znf143b
  
Synonyms : Q1LYE3 / zinc finger protein 143b / znf143b
  
Possible biological names infered from orthology : O70230 / P52747 / Zfp143 / zinc finger protein 143 / ZNF143
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 16924865
Gene end: 16937109
  
Corresponding Affymetrix probe sets: Dr.15217.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000090890
Ensembl peptide - ENSDARP00000122626
Ensembl peptide - ENSDARP00000009795
NCBI entrez gene - 393954     See in Manteia.
RefSeq - XM_005159072
RefSeq - XM_009293545
swissprot - Q1LYE3
swissprot - F1QUN1
swissprot - Q7SXJ2
ZFIN ID - ZDB-GENE-040426-1586
Ensembl - ENSDARG00000041581
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZNF143ENSGALG00000005787Gallus gallus
 P52747ENSG00000166478Homo sapiens
 O70230ENSMUSG00000061079Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
znf143a / zinc finger protein 143a / P52747* / Zfp143* / ZNF143* / O70230* / zinc finger protein 143*ENSDARG0000001288764
znf76 / zinc finger protein 76 / Zfp523* / P36508* / Q8BMU0* / zinc finger protein 523*ENSDARG0000001327947
mtf1 / metal-regulatory transcription factor 1 / Q14872*ENSDARG0000010289822
ZXDC / si:dkey-156n14.3 / Q2QGD7* / ZXD family zinc finger C*ENSDARG0000005235118
znf410 / zinc finger protein 410 / Q86VK4* / Q8BKX7* / Zfp410*ENSDARG0000000821814
gtf3aa / general transcription factor IIIAa / GTF3A* / Q92664* / transcription factor IIIA * / general transcription factor IIIA*ENSDARG0000003026712
yy1b / YY1 transcription factor b / YY1* / ZFP42* / Q96MM3* / P25490* / Q00899* / zinc finger protein 42* / YY1 transcription factor* / ZFP42 zinc finger protein*ENSDARG0000002797811
yy1a / YY1 transcription factor a / YY1* / ZFP42* / Q96MM3* / P25490* / Q00899* / zinc finger protein 42* / YY1 transcription factor* / ZFP42 zinc finger protein*ENSDARG0000004279611
gtf3ab / general transcription factor IIIA, b / GTF3A* / Q92664* / transcription factor IIIA * / general transcription factor IIIA*ENSDARG0000007158311
si:dkey-208k4.2ENSDARG0000010417011


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary aplastic , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000114 heart heart bifurcated , abnormal
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 ZFA:0000155 somite somite disorganized , abnormal
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 ZFA:0000217 inner ear inner ear morphology , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000002060 brf2 / BRF2, RNA polymerase III transcription initiation factor / Q9HAW0* / BRF2, RNA polymerase III transcription initiation factor subunit*  / complex / reaction
 ENSDARG00000014994 tbp / Q7SXL3 / TATA box binding protein / P20226* / P29037*  / complex / reaction






 

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