ENSDARG00000044246


Danio rerio

Features
Gene ID: ENSDARG00000044246
  
Biological name :snx18b
  
Synonyms : snx18b / sorting nexin 18b
  
Possible biological names infered from orthology : Q96RF0 / SNX18 / sorting nexin 18
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 9092815
Gene end: 9097996
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000064965
NCBI entrez gene - 548603     See in Manteia.
RefSeq - NM_001015063
RefSeq Peptide - NP_001015063
swissprot - B3DFM9
ZFIN ID - ZDB-GENE-080213-6
Ensembl - ENSDARG00000044246
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNX18ENSGALG00000014914Gallus gallus
 SNX18ENSG00000178996Homo sapiens
 Snx18ENSMUSG00000042364Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snx18a / sorting nexin 18a / SNX18* / Q96RF0* / sorting nexin 18*ENSDARG0000006771368
snx33 / sorting nexin 33 / Q4VAA7* / Q8WV41*ENSDARG0000001495447
snx9a / sorting nexin 9a / SNX9* / Q9Y5X1* / Q91VH2* / sorting nexin 9*ENSDARG0000000083734
snx9b / sorting nexin 9b / SNX9* / Q9Y5X1* / Q91VH2* / sorting nexin 9*ENSDARG0000006930234


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR001683  Phox homologous domain
 IPR014536  Sorting nexin 9 family
 IPR019497  Sorting nexin protein, WASP-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000278 mitotic cell cycle IEA
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IBA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA


Pathways (from Reactome)
Pathway description
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr