ENSDARG00000067713


Danio rerio

Features
Gene ID: ENSDARG00000067713
  
Biological name :snx18a
  
Synonyms : snx18a / sorting nexin 18a
  
Possible biological names infered from orthology : Q96RF0 / SNX18 / sorting nexin 18
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 40272848
Gene end: 40292299
  
Corresponding Affymetrix probe sets: Dr.17994.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000088296
NCBI entrez gene - 562372     See in Manteia.
RefSeq - NM_001100006
RefSeq Peptide - NP_001093476
swissprot - A5PMM5
ZFIN ID - ZDB-GENE-070705-339
Ensembl - ENSDARG00000067713
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNX18ENSGALG00000014914Gallus gallus
 SNX18ENSG00000178996Homo sapiens
 Snx18ENSMUSG00000042364Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snx18b / sorting nexin 18b / SNX18* / Q96RF0* / sorting nexin 18*ENSDARG0000004424667
snx33 / sorting nexin 33 / Q4VAA7* / Q8WV41*ENSDARG0000001495450
snx9b / sorting nexin 9b / SNX9* / Q9Y5X1* / Q91VH2* / sorting nexin 9*ENSDARG0000006930235
snx9a / sorting nexin 9a / SNX9* / Q9Y5X1* / Q91VH2* / sorting nexin 9*ENSDARG0000000083733


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR001683  Phox homologous domain
 IPR014536  Sorting nexin 9 family
 IPR019497  Sorting nexin protein, WASP-binding domain
 IPR035557  Sorting nexin-18, SH3 domain
 IPR035703  SNX18, PX domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000278 mitotic cell cycle IEA
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IBA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA


Pathways (from Reactome)
Pathway description
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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