ENSDARG00000052520


Danio rerio

Features
Gene ID: ENSDARG00000052520
  
Biological name :sgms2
  
Synonyms : sgms2 / sphingomyelin synthase 2
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 49933652
Gene end: 49950643
  
Corresponding Affymetrix probe sets: Dr.14540.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000116653
Ensembl peptide - ENSDARP00000122113
Ensembl peptide - ENSDARP00000118703
NCBI entrez gene - 556193     See in Manteia.
RefSeq - XM_017354910
RefSeq Peptide - NP_001139035
swissprot - B8A5Q0
swissprot - B8A5P9
swissprot - B8A5P8
ZFIN ID - ZDB-GENE-070730-2
Ensembl - ENSDARG00000052520
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:100911ENSDARG0000003689757
sgms1 / sphingomyelin synthase 1 / Q8VCQ6* / Phosphatidylcholine:ceramide cholinephosphotransferase 1 *ENSDARG0000002962153
zgc:91976 / SGMS1* / Q8VCQ6* / sphingomyelin synthase 1* / Phosphatidylcholine:ceramide cholinephosphotransferase 1 *ENSDARG0000005705351
SAMD8 / zgc:162183 / Q96LT4* / Q9DA37* / sterile alpha motif domain containing 8*ENSDARG0000007466335


Protein motifs (from Interpro)
Interpro ID Name
 IPR000326  Phosphatidic acid phosphatase type 2/haloperoxidase
 IPR025749  Sphingomyelin synthase-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006686 sphingomyelin biosynthetic process IBA
 biological_processGO:0046513 ceramide biosynthetic process IBA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030173 integral component of Golgi membrane IBA
 cellular_componentGO:0030176 integral component of endoplasmic reticulum membrane IBA
 molecular_functionGO:0033188 sphingomyelin synthase activity IBA
 molecular_functionGO:0047493 ceramide cholinephosphotransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr