ENSDARG00000057053


Danio rerio

Features
Gene ID: ENSDARG00000057053
  
Biological name :zgc:91976
  
Synonyms : zgc:91976
  
Possible biological names infered from orthology : Phosphatidylcholine:ceramide cholinephosphotransferase 1 / Q8VCQ6 / SGMS1 / sphingomyelin synthase 1
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 23729717
Gene end: 23765068
  
Corresponding Affymetrix probe sets: Dr.16800.1.A1_at (Zebrafish Array)   Dr.17089.1.A1_at (Zebrafish Array)   Dr.20466.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000031713
Ensembl peptide - ENSDARP00000122611
Ensembl peptide - ENSDARP00000144395
NCBI entrez gene - 492359     See in Manteia.
RefSeq - NM_001007325
RefSeq Peptide - NP_001007326
swissprot - Q5U3Z9
ZFIN ID - ZDB-GENE-041114-201
Ensembl - ENSDARG00000057053
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SGMS1ENSGALG00000003701Gallus gallus
 SGMS1ENSG00000198964Homo sapiens
 Sgms1ENSMUSG00000040451Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sgms1 / sphingomyelin synthase 1 / Q8VCQ6* / Phosphatidylcholine:ceramide cholinephosphotransferase 1 *ENSDARG0000002962163
sgms2 / sphingomyelin synthase 2ENSDARG0000005252043
zgc:100911ENSDARG0000003689740
SAMD8 / zgc:162183 / Q96LT4* / Q9DA37* / sterile alpha motif domain containing 8*ENSDARG0000007466335


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR025749  Sphingomyelin synthase-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006686 sphingomyelin biosynthetic process IBA
 biological_processGO:0046513 ceramide biosynthetic process IBA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030173 integral component of Golgi membrane IBA
 cellular_componentGO:0030176 integral component of endoplasmic reticulum membrane IBA
 molecular_functionGO:0033188 sphingomyelin synthase activity IBA
 molecular_functionGO:0047493 ceramide cholinephosphotransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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