ENSDARG00000052633


Danio rerio
domainsi:ch211-106n13.3laminingvonwillebrandfactortypecollagentriplehelixrepeatconcanavalina-likelectinglucanasesuperfamily

Features
Gene ID: ENSDARG00000052633
  
Biological name :si:ch211-106n13.3
  
Synonyms : si:ch211-106n13.3
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 49987088
Gene end: 50053006
  
Corresponding Affymetrix probe sets: Dr.1276.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000112633
Ensembl peptide - ENSDARP00000078089
NCBI entrez gene - 563353     See in Manteia.
RefSeq - NM_001045014
RefSeq Peptide - NP_001038479
swissprot - A5PM63
swissprot - Q1LYI5
ZFIN ID - ZDB-GENE-030131-9088
Ensembl - ENSDARG00000052633
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col21a1 / collagen, type XXI, alpha 1 / Q96P44* / collagen type XXI alpha 1 chain*ENSDARG0000002532033
si:dkey-225n22.4ENSDARG0000007724529
col4a5 / collagen, type IV, alpha 5 (Alport syndrome) / P29400* / collagen, type IV, alpha 5* / collagen type IV alpha 5 chain*ENSDARG0000005206320
col4a6 / collagen, type IV, alpha 6 / Q14031* / collagen type IV alpha 6 chain*ENSDARG0000005206118
col4a1 / collagen, type IV, alpha 1 / P02462* / P02463* / collagen type IV alpha 1 chain* / Collagen alpha-1(IV) chain Arresten*ENSDARG0000005500918
col4a4 / collagen, type IV, alpha 4 / Q9QZR9* / P53420* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSDARG0000000283117
col16a1 / collagen, type XVI, alpha 1 / Q8BLX7* / Q07092* / Collagen alpha-1(XVI) chain * / collagen type XVI alpha 1 chain*ENSDARG0000000919417
col4a3 / collagen, type IV, alpha 3 / Q01955* / Q9QZS0* / collagen type IV alpha 3 chain* / Collagen alpha-3(IV) chain Tumstatin*ENSDARG0000000339516
col4a2 / collagen, type IV, alpha 2 / P08122* / P08572* / collagen type IV alpha 2 chain* / Collagen alpha-2(IV) chain Canstatin*ENSDARG0000010411016
zmp:0000000760ENSDARG000000747458
col19a1 / collagen, type XIX, alpha 1ENSDARG000000761637
si:dkey-117n7.4ENSDARG000000920646


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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