ENSDARG00000025320


Danio rerio

Features
Gene ID: ENSDARG00000025320
  
Biological name :col21a1
  
Synonyms : col21a1 / collagen, type XXI, alpha 1
  
Possible biological names infered from orthology : collagen type XXI alpha 1 chain / Q96P44
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 1799003
Gene end: 1866711
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000033176
swissprot - E7FB76
ZFIN ID - ZDB-GENE-110607-3
Ensembl - ENSDARG00000025320
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL21A1ENSGALG00000016292Gallus gallus
 Q96P44ENSG00000124749Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-106n13.3ENSDARG0000005263341
si:dkey-225n22.4ENSDARG0000007724530
col4a5 / collagen, type IV, alpha 5 (Alport syndrome) / P29400* / collagen, type IV, alpha 5* / collagen type IV alpha 5 chain*ENSDARG0000005206320
col4a4 / collagen, type IV, alpha 4 / Q9QZR9* / P53420* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSDARG0000000283118
col4a3 / collagen, type IV, alpha 3 / Q01955* / Q9QZS0* / collagen type IV alpha 3 chain* / Collagen alpha-3(IV) chain Tumstatin*ENSDARG0000000339518
col4a6 / collagen, type IV, alpha 6 / Q14031* / collagen type IV alpha 6 chain*ENSDARG0000005206118
col16a1 / collagen, type XVI, alpha 1 / Q8BLX7* / Q07092* / Collagen alpha-1(XVI) chain * / collagen type XVI alpha 1 chain*ENSDARG0000000919417
col4a2 / collagen, type IV, alpha 2 / P08122* / P08572* / collagen type IV alpha 2 chain* / Collagen alpha-2(IV) chain Canstatin*ENSDARG0000010411017
col4a1 / collagen, type IV, alpha 1 / P02462* / P02463* / collagen type IV alpha 1 chain* / Collagen alpha-1(IV) chain Arresten*ENSDARG0000005500916
zmp:0000000760ENSDARG000000747457
col19a1 / collagen, type XIX, alpha 1ENSDARG000000761637
si:dkey-117n7.4ENSDARG000000920646


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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