ENSGALG00000016292


Gallus gallus

Features
Gene ID: ENSGALG00000016292
  
Biological name :COL21A1
  
Synonyms : COL21A1 / collagen type XXI alpha 1 chain
  
Possible biological names infered from orthology : Q96P44
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 87551101
Gene end: 87625448
  
Corresponding Affymetrix probe sets: GgaAffx.10422.1.S1_at (Chicken Array)   GgaAffx.10422.3.S1_at (Chicken Array)   GgaAffx.10422.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026223
NCBI entrez gene - 421885     See in Manteia.
RefSeq - XM_004940463
RefSeq - XM_419902
RefSeq - XM_015284894
RefSeq - XM_015284895
swissprot - E1BU12
Ensembl - ENSGALG00000016292
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col21a1ENSDARG00000025320Danio rerio
 Q96P44ENSG00000124749Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A5 / collagen type IV alpha 5 chain / P29400* / collagen, type IV, alpha 5*ENSGALG0000000814131
COL4A1 / collagen type IV alpha 1 chain / P02462* / P02463* / Collagen alpha-1(IV) chain Arresten*ENSGALG0000003679830
COL4A2 / collagen, type IV, alpha 2 precursor / P08122* / P08572* / collagen type IV alpha 2 chain* / Collagen alpha-2(IV) chain Canstatin*ENSGALG0000001684328
COL4A6 / collagen type IV alpha 6 chain / Q14031* / collagen, type IV, alpha 6*ENSGALG0000000826627
COL22A1 / collagen alpha-1(XXII) chain precursor / Q8NFW1* / collagen, type XXII, alpha 1* / collagen type XXII alpha 1 chain*ENSGALG0000003802227
COL4A3 / collagen type IV alpha 3 chain / Q01955* / Q9QZS0* / Collagen alpha-3(IV) chain Tumstatin*ENSGALG0000003861227
COL4A4* / P53420* / Q9QZR9* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSGALG0000000494623
COL19A1 / collagen type XIX alpha 1 chain / Q0VF58* / Q14993* / Collagen alpha-1(XIX) chain *ENSGALG0000004358421
Q07092* / Q8BLX7* / COL16A1* / Collagen alpha-1(XVI) chain * / collagen type XVI alpha 1 chain*ENSGALG000000268367
COL4A4* / P53420* / Q9QZR9* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSGALG000000431751


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0031012 extracellular matrix IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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