ENSGALG00000008141


Gallus gallus

Features
Gene ID: ENSGALG00000008141
  
Biological name :COL4A5
  
Synonyms : COL4A5 / collagen type IV alpha 5 chain
  
Possible biological names infered from orthology : collagen, type IV, alpha 5 / P29400
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 13955889
Gene end: 14009116
  
Corresponding Affymetrix probe sets: GgaAffx.20316.1.S1_at (Chicken Array)   GgaAffx.5110.6.S1_s_at (Chicken Array)   GgaAffx.5110.7.S1_at (Chicken Array)   GgaAffx.5196.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013206
NCBI entrez gene - 422348     See in Manteia.
RefSeq - XM_015278605
RefSeq - XM_015278606
RefSeq - XM_015278607
swissprot - F1NDF5
Ensembl - ENSGALG00000008141
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col4a5ENSDARG00000052063Danio rerio
 COL4A5ENSG00000188153Homo sapiens
 Col4a5ENSMUSG00000031274Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A1 / collagen type IV alpha 1 chain / P02462* / P02463* / Collagen alpha-1(IV) chain Arresten*ENSGALG0000003679862
COL4A3 / collagen type IV alpha 3 chain / Q01955* / Q9QZS0* / Collagen alpha-3(IV) chain Tumstatin*ENSGALG0000003861251
COL4A6 / collagen type IV alpha 6 chain / Q14031* / collagen, type IV, alpha 6*ENSGALG0000000826648
COL4A2 / collagen, type IV, alpha 2 precursor / P08122* / P08572* / collagen type IV alpha 2 chain* / Collagen alpha-2(IV) chain Canstatin*ENSGALG0000001684347
COL4A4* / P53420* / Q9QZR9* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSGALG0000000494634
COL22A1 / collagen alpha-1(XXII) chain precursor / Q8NFW1* / collagen, type XXII, alpha 1* / collagen type XXII alpha 1 chain*ENSGALG0000003802233
COL19A1 / collagen type XIX alpha 1 chain / Q0VF58* / Q14993* / Collagen alpha-1(XIX) chain *ENSGALG0000004358424
COL21A1 / collagen type XXI alpha 1 chain / Q96P44*ENSGALG0000001629218
Q07092* / Q8BLX7* / COL16A1* / Collagen alpha-1(XVI) chain * / collagen type XVI alpha 1 chain*ENSGALG000000268368
COL4A4* / P53420* / Q9QZR9* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSGALG000000431757


Protein motifs (from Interpro)
Interpro ID Name
 IPR001442  Collagen IV, non-collagenous
 IPR008160  Collagen triple helix repeat
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007528 neuromuscular junction development IEA
 biological_processGO:0038063 collagen-activated tyrosine kinase receptor signaling pathway IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005587 collagen type IV trimer IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005605 basal lamina IEA
 cellular_componentGO:0031594 neuromuscular junction IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Crosslinking of collagen fibrils
Laminin interactions
Non-integrin membrane-ECM interactions
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr