ENSDARG00000063003


Danio rerio

Features
Gene ID: ENSDARG00000063003
  
Biological name :alkbh5
  
Synonyms : alkbh5 / alkB homolog 5, RNA demethylase / Q08BA6
  
Possible biological names infered from orthology : Q3TSG4 / Q6P6C2 / RNA demethylase ALKBH5
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 8508753
Gene end: 8516595
  
Corresponding Affymetrix probe sets: Dr.13995.1.A1_at (Zebrafish Array)   NM_001077387_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000086116
NCBI entrez gene - 570158     See in Manteia.
RefSeq - NM_001077387
RefSeq Peptide - NP_001070855
swissprot - Q08BA6
ZFIN ID - ZDB-GENE-061013-602
Ensembl - ENSDARG00000063003
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ALKBH5ENSGALG00000043693Gallus gallus
 ALKBH5ENSG00000091542Homo sapiens
 Alkbh5ENSMUSG00000042650Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR027450  Alpha-ketoglutarate-dependent dioxygenase AlkB-like
 IPR032860  RNA demethylase ALKBH5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001666 response to hypoxia ISS
 biological_processGO:0006397 mRNA processing IBA
 biological_processGO:0006406 mRNA export from nucleus ISS
 biological_processGO:0007283 spermatogenesis ISS
 biological_processGO:0035553 oxidative single-stranded RNA demethylation IBA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0016607 nuclear speck ISS
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors ISS
 molecular_functionGO:0035515 oxidative RNA demethylase activity IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051213 dioxygenase activity IEA


Pathways (from Reactome)
Pathway description
Reversal of alkylation damage by DNA dioxygenases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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