ENSDARG00000063332


Danio rerio

Features
Gene ID: ENSDARG00000063332
  
Biological name :shank3a
  
Synonyms : SH3 and multiple ankyrin repeat domains 3a / shank3a
  
Possible biological names infered from orthology : Q4ACU6 / SH3 and multiple ankyrin repeat domains 3 / SH3 and multiple ankyrin repeat domains protein 3 / SHANK3
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 7663802
Gene end: 8030073
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000086238
Ensembl peptide - ENSDARP00000086888
Ensembl peptide - ENSDARP00000117623
Ensembl peptide - ENSDARP00000120237
Ensembl peptide - ENSDARP00000126274
swissprot - F1QBX1
swissprot - F1QCQ3
swissprot - F1QJ05
swissprot - F1QY89
swissprot - I3ITK4
ZFIN ID - ZDB-GENE-060503-369
Ensembl - ENSDARG00000063332
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000033919Gallus gallus
 ENSGALG00000039165Gallus gallus
 SHANK3ENSG00000251322Homo sapiens
 Q4ACU6ENSMUSG00000022623Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
shank3b / SH3 and multiple ankyrin repeat domains 3b / SHANK3* / Q4ACU6* / SH3 and multiple ankyrin repeat domains 3* / SH3 and multiple ankyrin repeat domains protein 3 *ENSDARG0000006305456
shank2 / SH3 and multiple ankyrin repeat domains 2 / Q80Z38* / Q9UPX8* / SH3 and multiple ankyrin repeat domains protein 2 *ENSDARG0000006232541
si:ch1073-450f2.1ENSDARG0000010244325
shank1 / SH3 and multiple ankyrin repeat domains 1 / D3YZU1* / Q9Y566* / SH3 and multiple ankyrin repeat domains protein 1 *ENSDARG0000006053923


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR001478  PDZ domain
 IPR001660  Sterile alpha motif domain
 IPR002110  Ankyrin repeat
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR020683  Ankyrin repeat-containing domain
 IPR032425  Talin, N-terminal F0 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0036269 swimming behavior IMP
 biological_processGO:0048854 brain morphogenesis IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased size , abnormal
Show

 ZFA:0000029 hindbrain hindbrain GABAergic neuron decreased amount , abnormal
hindbrain glutamatergic neuron decreased amount , abnormal
hindbrain apoptotic , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary morphology , abnormal
Show

 ZFA:0000075 spinal cord spinal cord apoptotic , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000128 midbrain midbrain GABAergic neuron decreased amount , abnormal
midbrain apoptotic , abnormal
Show

 ZFA:0001094 whole organism whole organism dead , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
Show

 ZFA:0009150 Rohon-Beard neuron Rohon-Beard neuron absent , abnormal
Rohon-Beard neuron decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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