ENSDARG00000067859


Danio rerio

Features
Gene ID: ENSDARG00000067859
  
Biological name :scospondin
  
Synonyms : scospondin / subcommissural organ spondin
  
Possible biological names infered from orthology : Q8CG65 / SCO-spondin / SSPO
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 40016889
Gene end: 40171461
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000088544
Ensembl peptide - ENSDARP00000120990
swissprot - F1QM61
swissprot - F1QSL8
ZFIN ID - ZDB-GENE-051114-1
Ensembl - ENSDARG00000067859
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SSPOENSGALG00000033417Gallus gallus
 SSPOENSG00000197558Homo sapiens
 SspoENSMUSG00000029797Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
muc5.2 / mucin 5.2 / MUC5B* / MUC5AC* / P98088* / Q9HC84* / mucin 5B, oligomeric mucus/gel-forming* / mucin 5AC, oligomeric mucus/gel-forming*ENSDARG0000005855613
muc5.1 / mucin 5.1, oligomeric mucus/gel-forming / MUC5B* / MUC5AC* / P98088* / Q9HC84* / mucin 5B, oligomeric mucus/gel-forming* / mucin 5AC, oligomeric mucus/gel-forming*ENSDARG0000007033113
muc5.3 / mucin 5.3 / MUC5B* / MUC5AC* / P98088* / Q9HC84* / mucin 5B, oligomeric mucus/gel-forming* / mucin 5AC, oligomeric mucus/gel-forming*ENSDARG0000009947013
vwf / von Willebrand factor / P04275*ENSDARG0000007723112
otog / otogelin / Q6ZRI0*ENSDARG0000006846011
otogl / otogelin-like / F7A4A7* / Q3ZCN5* / Otogelin-like protein *ENSDARG0000008875010
si:ch211-39f2.3ENSDARG000000975399
CABZ01080550.1ENSDARG000001006219
si:dkey-239b22.1ENSDARG000000315888
zanl / zonadhesin, like / ZAN* / zonadhesin* / zonadhesin (gene/pseudogene)*ENSDARG000000567818
si:dkey-65b12.6 / FCGBP* / 9530053A07Rik* / RIKEN cDNA 9530053A07 gene* / Fc fragment of IgG binding protein*ENSDARG000000768308
tecta / tectorin alpha / O08523* / O75443*ENSDARG000000595587


Protein motifs (from Interpro)
Interpro ID Name
 IPR000421  Coagulation factor 5/8 C-terminal domain
 IPR000884  Thrombospondin type-1 (TSP1) repeat
 IPR001007  VWFC domain
 IPR001846  von Willebrand factor, type D domain
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR002919  Trypsin Inhibitor-like, cysteine rich domain
 IPR006207  Cystine knot, C-terminal
 IPR008979  Galactose-binding-like domain superfamily
 IPR014853  Uncharacterised domain, cysteine-rich
 IPR023415  Low-density lipoprotein (LDL) receptor class A, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0030154 cell differentiation IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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