ENSDARG00000076847


Danio rerio

Features
Gene ID: ENSDARG00000076847
  
Biological name :tnrc6c1
  
Synonyms : tnrc6c1 / trinucleotide repeat containing 6C1
  
Possible biological names infered from orthology : Q9HCJ0 / TNRC6C / trinucleotide repeat containing 6C
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 34258755
Gene end: 34337969
  
Corresponding Affymetrix probe sets: Dr.24042.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000149733
Ensembl peptide - ENSDARP00000149934
Ensembl peptide - ENSDARP00000099922
Ensembl peptide - ENSDARP00000125624
NCBI entrez gene - 560874     See in Manteia.
RefSeq - XM_005164094
RefSeq - XM_009299598
swissprot - E7F055
ZFIN ID - ZDB-GENE-030131-7440
Ensembl - ENSDARG00000076847
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNRC6CENSGALG00000001725Gallus gallus
 Q9HCJ0ENSG00000078687Homo sapiens
 Tnrc6cENSMUSG00000025571Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnrc6c2 / trinucleotide repeat containing 6C2 / Q9HCJ0* / TNRC6C* / trinucleotide repeat containing 6C*ENSDARG0000010385151
tnrc6a / trinucleotide repeat containing 6a / Q8NDV7*ENSDARG0000007968834
tnrc6b / trinucleotide repeat containing 6b / Q8BKI2* / Q9UPQ9*ENSDARG0000007416130
si:dkey-46g23.1 / Q8BKI2* / Q9UPQ9* / TNRC6B* / trinucleotide repeat containing 6B*ENSDARG0000007972323
si:dkey-217f16.6 / Q8BKI2* / Q9UPQ9* / TNRC6B* / trinucleotide repeat containing 6B*ENSDARG0000007638917


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR009060  UBA-like superfamily
 IPR015940  Ubiquitin-associated domain
 IPR019486  Argonaute hook domain
 IPR026805  GW182, middle domain
 IPR032226  TNRC6, PABC binding domain
 IPR033499  Trinucleotide repeat-containing gene 6C protein
 IPR034927  TNRC6C, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035278 miRNA mediated inhibition of translation IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Post-transcriptional silencing by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000015829 mov10a / Mov10 RISC complex RNA helicase a / MOV10* / Q9HCE1* / Mov10 RISC complex RNA helicase*  / complex
 ENSDARG00000061177 Q1LXK4 / mov10b.1 / Moloney leukemia virus 10b, tandem duplicate 1 / MOV10* / Q9HCE1* / P23249* / Putative helicase MOV-10 * / Mov10 RISC complex RNA helicase*  / complex
 ENSDARG00000056065 Q1LXK5 / mov10b.2 / Moloney leukemia virus 10b, tandem duplicate 2 / MOV10* / Q9HCE1* / P23249* / Putative helicase MOV-10 * / Mov10 RISC complex RNA helicase*  / complex
 ENSDARG00000063079 ago3b / A3KPK0 / argonaute RISC catalytic component 3b / AGO3* / Q8CJF9* / Q9H9G7* / Protein argonaute-3 * / argonaute 3, RISC catalytic component*  / complex
 ENSDARG00000092644 ago1 / argonaute RISC catalytic component 1 / Q8CJG1* / Q9UL18* / Protein argonaute-1 * / argonaute 1, RISC catalytic component*  / complex
 ENSDARG00000100854 ago4 / argonaute RISC catalytic component 4 / Q9HCK5* / argonaute 4, RISC catalytic component*  / complex






 

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