ENSDARG00000088121


Danio rerio

Features
Gene ID: ENSDARG00000088121
  
Biological name :pkd1l2b
  
Synonyms : pkd1l2b / polycystic kidney disease 1 like 2b
  
Possible biological names infered from orthology : Pkd1l2
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 67253561
Gene end: 67285622
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000129629
swissprot - X1WHB7
ZFIN ID - ZDB-GENE-141222-87
Ensembl - ENSDARG00000088121
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000005435Gallus gallus
 Pkd1l2ENSMUSG00000034416Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pkd1l2b / polycystic kidney disease 1 like 2b / Pkd1l2*ENSDARG00000101214100
pkd1l2a / polycystic kidney disease 1 like 2a / Pkd1l2*ENSDARG0000010534445
pkd1a / polycystic kidney disease 1a / PKD1* / P98161* / polycystin 1, transient receptor potential channel interacting*ENSDARG0000003041716
pkd1b / polycystic kidney disease 1bENSDARG0000003302911
pkd2 / Q6IVV8 / polycystic kidney disease 2 / Q13563* / O35245* / Polycystin-2 * / polycystin 2, transient receptor potential cation channel*ENSDARG000000140982
pkd2l1 / polycystic kidney disease 2-like 1 / A2A259* / Q9P0L9* / Polycystic kidney disease 2-like 1 protein * / polycystin 2 like 1, transient receptor potential cation channel*ENSDARG000000225031


Protein motifs (from Interpro)
Interpro ID Name
 IPR000203  GPS motif
 IPR000922  D-galactoside/L-rhamnose binding SUEL lectin domain
 IPR001304  C-type lectin-like
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0050982 detection of mechanical stimulus IBA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0016020 membrane IBA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005262 calcium channel activity IBA
 molecular_functionGO:0030246 carbohydrate binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr