ENSDARG00000088475


Danio rerio

Features
Gene ID: ENSDARG00000088475
  
Biological name :pcdh1gb9
  
Synonyms : pcdh1gb9 / protocadherin 1 gamma b 9
  
Possible biological names infered from orthology : PCDHB15 / Pcdhga10 / Pcdhga11 / Pcdhga3 / Pcdhga4 / Pcdhga5 / Pcdhga6 / Pcdhga7 / Pcdhga8 / protocadherin beta 15 / Protocadherin gamma-A4 / protocadherin gamma subfamily A, 10 / protocadherin gamma subfamily A, 11 / protocadherin gamma subfamily A, 3 / protocadherin gamma subfamily A, 5 / protocadherin gamma subfamily A, 6 / protocadherin gamma subfamily A, 7 / protocadherin gamma subfamily A, 8 / Q91XY4 / Q9Y5E8
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 21718468
Gene end: 21818583
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000105847
NCBI entrez gene - 553940     See in Manteia.
RefSeq - NM_001020778
RefSeq Peptide - NP_001018614
swissprot - F1QXY7
ZFIN ID - ZDB-GENE-041118-18
Ensembl - ENSDARG00000088475
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000044463Gallus gallus
 Q9Y5E8ENSG00000113248Homo sapiens
 Pcdhga10ENSMUSG00000102222Mus musculus
 Pcdhga11ENSMUSG00000102742Mus musculus
 Pcdhga3ENSMUSG00000104346Mus musculus
 Pcdhga5ENSMUSG00000103567Mus musculus
 Pcdhga6ENSMUSG00000103793Mus musculus
 Pcdhga7ENSMUSG00000103472Mus musculus
 Pcdhga8ENSMUSG00000103897Mus musculus
 Q91XY4ENSMUSG00000103677Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh1gb2 / protocadherin 1 gamma b 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...ENSDARG0000010130768
pcdh2g5 / pcdh2g17 / pcdh2g20 / pcdh2g28 / pcdh2g29 / pcdh2g13 / protocadherin 2 gamma 5 / Q9Y5E8* / PCDHB15* / protocadherin beta 15*ENSDARG0000009878863
pcdh1g2 / protocadherin 1 gamma 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Protoca...ENSDARG0000010123248
pcdh1g31 / protocadherin 1 gamma 31ENSDARG0000010067042
pcdh1g30 / protocadherin 1 gamma 30ENSDARG0000010186542
si:ch73-233f7.1ENSDARG0000006190940
PCDHB15 / protocadherin beta 15 / Q9Y5E8*ENSDARG0000010133838
pcdh1a6 / pcdh1a4 / protocadherin 1 alpha 6 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000009717035
pcdh10a / protocadherin 10a / PCDH10* / Q9P2E7* / protocadherin 10*ENSDARG0000009972935
pcdh2ab5 / protocadherin 2 alpha b 5 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000009034834
pcdh17 / protocadherin 17 / O14917*ENSDARG0000002704131
pcdh2ab11 / protocadherin 2 alpha b 11 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000008959331
pcdh19 / protocadherin 19 / Q80TF3* / Q8TAB3*ENSDARG0000003434430
pcdh18b / protocadherin 18b / Q9HCL0* / PCDH18* / Q8VHR0* / protocadherin 18*ENSDARG0000005249430
pcdh18a / protocadherin 18a / PCDH18* / Q9HCL0* / protocadherin 18*ENSDARG0000008980530
pcdh8 / protocadherin 8 / O95206*ENSDARG0000000646727
pcdh12 / protocadherin 12 / O55134* / Q9NPG4*ENSDARG0000007659426
PCDH8 / si:ch211-199f5.1 / O95206* / Q7TSK3* / protocadherin 8*ENSDARG0000010218526


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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