ENSDARG00000027041


Danio rerio

Features
Gene ID: ENSDARG00000027041
  
Biological name :pcdh17
  
Synonyms : pcdh17 / protocadherin 17
  
Possible biological names infered from orthology : O14917
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 32576300
Gene end: 32723851
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000128805
NCBI entrez gene - 561336     See in Manteia.
RefSeq - XM_005155856
RefSeq Peptide - NP_001154294
swissprot - C4P342
ZFIN ID - ZDB-GENE-090608-3
Ensembl - ENSDARG00000027041
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PCDH17ENSGALG00000016941Gallus gallus
 O14917ENSG00000118946Homo sapiens
 Pcdh17ENSMUSG00000035566Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh19 / protocadherin 19 / Q80TF3* / Q8TAB3*ENSDARG0000003434444
pcdh18b / protocadherin 18b / Q9HCL0* / PCDH18* / Q8VHR0* / protocadherin 18*ENSDARG0000005249436
pcdh18a / protocadherin 18a / PCDH18* / Q9HCL0* / protocadherin 18*ENSDARG0000008980536
pcdh10a / protocadherin 10a / PCDH10* / Q9P2E7* / protocadherin 10*ENSDARG0000009972934
si:ch73-233f7.1ENSDARG0000006190929
pcdh12 / protocadherin 12 / O55134* / Q9NPG4*ENSDARG0000007659428
pcdh2ab5 / protocadherin 2 alpha b 5 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000009034828
pcdh1a6 / pcdh1a4 / protocadherin 1 alpha 6 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000009717028
pcdh2g5 / pcdh2g17 / pcdh2g20 / pcdh2g28 / pcdh2g29 / pcdh2g13 / protocadherin 2 gamma 5 / Q9Y5E8* / PCDHB15* / protocadherin beta 15*ENSDARG0000009878827
PCDH8 / si:ch211-199f5.1 / O95206* / Q7TSK3* / protocadherin 8*ENSDARG0000010218527
pcdh2ab11 / protocadherin 2 alpha b 11 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000008959326
pcdh1g31 / protocadherin 1 gamma 31ENSDARG0000010067026
pcdh1g30 / protocadherin 1 gamma 30ENSDARG0000010186526
pcdh1gb9 / protocadherin 1 gamma b 9 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...ENSDARG0000008847525
pcdh1g2 / protocadherin 1 gamma 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Protoca...ENSDARG0000010123225
PCDHB15 / protocadherin beta 15 / Q9Y5E8*ENSDARG0000010133825
pcdh8 / protocadherin 8 / O95206*ENSDARG0000000646724
pcdh1gb2 / protocadherin 1 gamma b 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...ENSDARG0000010130724


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030709  Protocadherin-17


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007416 synapse assembly IBA
 biological_processGO:0060041 retina development in camera-type eye IMP
 biological_processGO:0060219 camera-type eye photoreceptor cell differentiation IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000024 retinal ganglion cell layer retinal ganglion cell layer decreased size , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000435 cranial nerve II cranial nerve II decreased thickness , abnormal
Show

 ZFA:0001329 retinal inner plexiform layer retinal inner plexiform layer decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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