ENSDARG00000089805


Danio rerio

Features
Gene ID: ENSDARG00000089805
  
Biological name :pcdh18a
  
Synonyms : pcdh18a / protocadherin 18a
  
Possible biological names infered from orthology : PCDH18 / protocadherin 18 / Q8VHR0 / Q9HCL0
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 13260809
Gene end: 13271569
  
Corresponding Affymetrix probe sets: Dr.16880.1.S1_at (Zebrafish Array)   Dr.19441.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000108171
Ensembl peptide - ENSDARP00000148237
NCBI entrez gene - 572532     See in Manteia.
RefSeq - NM_001115058
RefSeq - XM_005159847
RefSeq Peptide - NP_001108530
swissprot - F1QRP2
ZFIN ID - ZDB-GENE-000607-1
Ensembl - ENSDARG00000089805
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PCDH18ENSGALG00000009732Gallus gallus
 PCDH18ENSG00000189184Homo sapiens
 Pcdh18ENSMUSG00000037892Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh18b / protocadherin 18b / Q9HCL0* / PCDH18* / Q8VHR0* / protocadherin 18*ENSDARG0000005249469
pcdh17 / protocadherin 17 / O14917*ENSDARG0000002704136
pcdh19 / protocadherin 19 / Q80TF3* / Q8TAB3*ENSDARG0000003434435
pcdh12 / protocadherin 12 / O55134* / Q9NPG4*ENSDARG0000007659435
pcdh10a / protocadherin 10a / PCDH10* / Q9P2E7* / protocadherin 10*ENSDARG0000009972932
si:ch73-233f7.1ENSDARG0000006190928
PCDH8 / si:ch211-199f5.1 / O95206* / Q7TSK3* / protocadherin 8*ENSDARG0000010218528
pcdh8 / protocadherin 8 / O95206*ENSDARG0000000646727
pcdh1gb9 / protocadherin 1 gamma b 9 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...ENSDARG0000008847525
pcdh2g5 / pcdh2g17 / pcdh2g20 / pcdh2g28 / pcdh2g29 / pcdh2g13 / protocadherin 2 gamma 5 / Q9Y5E8* / PCDHB15* / protocadherin beta 15*ENSDARG0000009878825
pcdh1g31 / protocadherin 1 gamma 31ENSDARG0000010067025
pcdh1g30 / protocadherin 1 gamma 30ENSDARG0000010186525
pcdh2ab5 / protocadherin 2 alpha b 5 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000009034824
pcdh1a6 / pcdh1a4 / protocadherin 1 alpha 6 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000009717024
pcdh1g2 / protocadherin 1 gamma 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Protoca...ENSDARG0000010123224
pcdh1gb2 / protocadherin 1 gamma b 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...ENSDARG0000010130724
PCDHB15 / protocadherin beta 15 / Q9Y5E8*ENSDARG0000010133824
pcdh2ab11 / protocadherin 2 alpha b 11 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000008959323


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IMP
 biological_processGO:0042074 cell migration involved in gastrulation IMP
 biological_processGO:0055113 epiboly involved in gastrulation with mouth forming second IMP
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000092 axis axis decreased length , abnormal
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 ZFA:0000155 somite somite increased width , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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