ENSGALG00000016941


Gallus gallus

Features
Gene ID: ENSGALG00000016941
  
Biological name :PCDH17
  
Synonyms : PCDH17 / protocadherin 17
  
Possible biological names infered from orthology : O14917
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 163446840
Gene end: 163527123
  
Corresponding Affymetrix probe sets: Gga.14466.1.S1_at (Chicken Array)   Gga.86.1.A1_s_at (Chicken Array)   Gga.86.1.S1_s_at (Chicken Array)   Gga.9503.1.A1_s_at (Chicken Array)   Gga.9503.1.S1_s_at (Chicken Array)   GgaAffx.25135.1.S1_at (Chicken Array)   GgaAffx.25136.1.A1_at (Chicken Array)   GgaAffx.25136.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027332
NCBI entrez gene - 418825     See in Manteia.
RefSeq - XM_015276813
RefSeq - XM_015276837
RefSeq - XM_015276818
RefSeq - XM_015276826
swissprot - F1NXI0
Ensembl - ENSGALG00000016941
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh17ENSDARG00000027041Danio rerio
 O14917ENSG00000118946Homo sapiens
 Pcdh17ENSMUSG00000035566Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDH19 / protocadherin-19 precursor / Q80TF3* / Q8TAB3* / protocadherin 19*ENSGALG0000000682246
PCDH18 / protocadherin 18 / Q8VHR0* / Q9HCL0*ENSGALG0000000973233
PCDH8 / protocadherin-8 precursor / O95206* / Q7TSK3* / protocadherin 8*ENSGALG0000003625829
PCDH12 / protocadherin 12 / O55134* / Q9NPG4*ENSGALG0000000254428
PCDHGC3 / Gallus gallus protocadherin gamma subfamily A, 2 (PCDHGA2), mRNA.ENSGALG0000002856526
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000004160125
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000002970024
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000003615924
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000004130624
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000004169224
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000004194724
Q9Y5E8* / PCDHB15* / protocadherin beta 15*ENSGALG0000004446324
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000004223022


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030709  Protocadherin-17


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007416 synapse assembly IBA
 biological_processGO:0030534 adult behavior IEA
 biological_processGO:0050805 negative regulation of synaptic transmission IEA
 biological_processGO:1904071 presynaptic active zone assembly IEA
 biological_processGO:2000807 regulation of synaptic vesicle clustering IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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