Manteia

ENSGALG00000002544

Gallus gallus

Features

Gene ID:	ENSGALG00000002544

Biological name :	PCDH12

Synonyms :	PCDH12 / protocadherin 12

Possible biological names infered from orthology :	O55134 / Q9NPG4

Species:	Gallus gallus

Chr. number:	13
Strand:	-1
Band:
Gene start:	2380544
Gene end:	2389689

Corresponding Affymetrix probe sets:	GgaAffx.1676.2.S1_at (Chicken Array) GgaAffx.1676.2.S1_s_at (Chicken Array)

Cross references:	Ensembl peptide - ENSGALP00000004006 NCBI entrez gene - 416191 See in Manteia. RefSeq - XM_414518 swissprot - F1NI83 Ensembl - ENSGALG00000002544

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
pcdh12	ENSDARG00000076594	Danio rerio
PCDH12	ENSG00000113555	Homo sapiens
O55134	ENSMUSG00000024440	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
PCDH18 / protocadherin 18 / Q8VHR0* / Q9HCL0*	ENSGALG00000009732	34
PCDH17 / protocadherin 17 / O14917*	ENSGALG00000016941	30
PCDH19 / protocadherin-19 precursor / Q80TF3* / Q8TAB3* / protocadherin 19*	ENSGALG00000006822	29
PCDH8 / protocadherin-8 precursor / O95206* / Q7TSK3* / protocadherin 8*	ENSGALG00000036258	28
PCDHGC3 / Gallus gallus protocadherin gamma subfamily A, 2 (PCDHGA2), mRNA.	ENSGALG00000028565	25
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000029700	24
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000041601	24
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000041947	24
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000036159	23
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000041692	23
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000041306	22
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000042230	22
Q9Y5E8* / PCDHB15* / protocadherin beta 15*	ENSGALG00000044463	21

Protein motifs (from Interpro)

Interpro ID	Name
IPR002126	Cadherin
IPR013164	Cadherin, N-terminal
IPR015919	Cadherin-like
IPR020894	Cadherin conserved site
IPR030720	Protocadherin-12

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0005977	glycogen metabolic process	IEA
biological_process	GO:0007155	cell adhesion	IBA
biological_process	GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules	IEA
biological_process	GO:0007267	cell-cell signaling	IBA
biological_process	GO:0007399	nervous system development	IBA
biological_process	GO:0016339	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	IEA
biological_process	GO:0060711	labyrinthine layer development	IEA
cellular_component	GO:0005886	plasma membrane	IEA
cellular_component	GO:0005887	integral component of plasma membrane	IBA
cellular_component	GO:0005911	cell-cell junction	IEA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	IEA
molecular_function	GO:0005509	calcium ion binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2025 contact: otassy@igbmc.fr