ENSDARG00000090337


Danio rerio

Features
Gene ID: ENSDARG00000090337
  
Biological name :pprc1
  
Synonyms : peroxisome proliferator-activated receptor gamma, coactivator-related 1 / pprc1
  
Possible biological names infered from orthology : Mus musculus peroxisome proliferative activated receptor, gamma, coactivator-related 1 (Pprc1), transcript variant 2, mRNA. / Q5VV67 / Q6NZN1
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 12007904
Gene end: 12021566
  
Corresponding Affymetrix probe sets: Dr.2988.1.A1_at (Zebrafish Array)   XM_001338200_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000107880
NCBI entrez gene - 100002463     See in Manteia.
RefSeq - XM_001338200
swissprot - E7F4W0
ZFIN ID - ZDB-GENE-030131-9858
Ensembl - ENSDARG00000090337
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PPRC1ENSGALG00000020742Gallus gallus
 PPRC1ENSG00000148840Homo sapiens
 Pprc1ENSMUSG00000055491Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-93h22.8 / PPRC1* / Q5VV67* / Q6NZN1* / peroxisome proliferator-activated receptor gamma, coactivator-related 1* / Mus musculus peroxisome proliferative activated receptor, gamma, co...ENSDARG0000009866631
ppargc1a / peroxisome proliferator-activated receptor gamma, coactivator 1 alpha / Q9UBK2* / PPARG coactivator 1 alpha*ENSDARG0000006782915
ppargc1b / peroxisome proliferator-activated receptor gamma, coactivator 1 beta / Q86YN6* / Q8VHJ7* / PPARG coactivator 1 beta*ENSDARG0000010156912


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034597  PGC-1-related coactivator
 IPR034605  PGC-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003712 transcription coregulator activity IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0030374 nuclear receptor transcription coactivator activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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