ENSDARG00000091556


Danio rerio

Features
Gene ID: ENSDARG00000091556
  
Biological name :tnfsf13
  
Synonyms : tnfsf13 / TNF superfamily member 13
  
Possible biological names infered from orthology : O43508 / O54907 / O75888 / TNFSF12 / TNFSF12-TNFSF13 / TNFSF12-TNFSF13 readthrough / Tnfsfm13 / TNF superfamily member 12 / Tumor necrosis factor ligand superfamily member 12 Tumor necrosis factor ligand superfamily member 12, membrane form Tumor necrosis factor ligand superfamily member 12, secreted form / tumor necrosis factor (ligand) superfamily, member 13 / tumor necrosis factor (ligand) superfamily, membrane-bound member 13
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 68267908
Gene end: 68278095
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000108128
NCBI entrez gene - 100149404     See in Manteia.
RefSeq - NM_001168464
RefSeq Peptide - NP_001161936
swissprot - F1QSF7
ZFIN ID - ZDB-GENE-120508-6
Ensembl - ENSDARG00000091556
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O43508ENSG00000239697Homo sapiens
 O75888ENSG00000161955Homo sapiens
 TNFSF12-TNFSF13ENSG00000248871Homo sapiens
 O54907ENSMUSG00000097328Mus musculus
 Tnfsf13ENSMUSG00000089669Mus musculus
 Tnfsfm13ENSMUSG00000018752Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnfsf13b / TNF superfamily member 13b / Q9Y275*ENSDARG0000001294528


Protein motifs (from Interpro)
Interpro ID Name
 IPR006052  Tumour necrosis factor domain
 IPR008983  Tumour necrosis factor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002260 lymphocyte homeostasis IDA
 biological_processGO:0006955 immune response IEA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0005164 tumor necrosis factor receptor binding IEA


Pathways (from Reactome)
Pathway description
HuR (ELAVL1) binds and stabilizes mRNA
TNFR2 non-canonical NF-kB pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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