ENSDARG00000012945


Danio rerio

Features
Gene ID: ENSDARG00000012945
  
Biological name :tnfsf13b
  
Synonyms : tnfsf13b / TNF superfamily member 13b
  
Possible biological names infered from orthology : Q9WU72 / Q9Y275 / tumor necrosis factor (ligand) superfamily, member 13b
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 5325015
Gene end: 5337923
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000136318
Ensembl peptide - ENSDARP00000147939
Ensembl peptide - ENSDARP00000002102
NCBI entrez gene - 561268     See in Manteia.
RefSeq - NM_001113590
RefSeq Peptide - NP_001107062
swissprot - A0A0R4IKC8
swissprot - F1QUA2
ZFIN ID - ZDB-GENE-080204-44
Ensembl - ENSDARG00000012945
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000045364Gallus gallus
 TNFSF13BENSGALG00000016852Gallus gallus
 Q9Y275ENSG00000102524Homo sapiens
 Q9WU72ENSMUSG00000031497Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnfsf13 / TNF superfamily member 13 / O75888* / O43508* / TNFSF12* / TNFSF12-TNFSF13* / TNF superfamily member 12* / TNFSF12-TNFSF13 readthrough*ENSDARG0000009155621


Protein motifs (from Interpro)
Interpro ID Name
 IPR006052  Tumour necrosis factor domain
 IPR008983  Tumour necrosis factor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006955 immune response IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005164 tumor necrosis factor receptor binding IEA


Pathways (from Reactome)
Pathway description
TNFR2 non-canonical NF-kB pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000012945 tnfsf13b / TNF superfamily member 13b / Q9Y275*  / complex
 ENSDARG00000030173 traf2a / Tnf receptor-associated factor 2a / TRAF2* / P39429* / Q12933* / TNF receptor associated factor 2*  / complex
 ENSDARG00000022000 traf3 / TNF receptor-associated factor 3 / Q13114* / Q60803*  / complex
 ENSDARG00000044619 birc2 / baculoviral IAP repeat containing 2 / BIRC3* / Q13489* / Q13490* / Q62210* / baculoviral IAP repeat containing 3* / Baculoviral IAP repeat-containing protein 2 *  / complex
 ENSDARG00000074060 map3k14a / mitogen-activated protein kinase kinase kinase 14a / Q9WUL6* / Q99558* / MAP3K14* / mitogen-activated protein kinase kinase kinase 14*  / complex






 

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