ENSGALG00000016852


Gallus gallus

Features
Gene ID: ENSGALG00000016852
  
Biological name :TNFSF13B
  
Synonyms : TNFSF13B
  
Possible biological names infered from orthology : Q9WU72 / Q9Y275 / TNF superfamily member 13b / tumor necrosis factor (ligand) superfamily, member 13b
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 140144843
Gene end: 140158209
  
Corresponding Affymetrix probe sets: Gga.4359.1.S1_s_at (Chicken Array)   Gga.4359.1.S2_s_at (Chicken Array)   GgaAffx.13138.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027177
NCBI entrez gene - 374229     See in Manteia.
RefSeq - NM_204327
RefSeq - XM_015274146
RefSeq Peptide - NP_989658
swissprot - Q8JHJ4
Ensembl - ENSGALG00000016852
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tnfsf13bENSDARG00000012945Danio rerio
 Q9Y275ENSG00000102524Homo sapiens
 Q9WU72ENSMUSG00000031497Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9WU72* / Q9Y275* / TNFSF13B* / TNF superfamily member 13b* / tumor necrosis factor (ligand) superfamily, member 13b*ENSGALG0000004536439


Protein motifs (from Interpro)
Interpro ID Name
 IPR006052  Tumour necrosis factor domain
 IPR008983  Tumour necrosis factor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006955 immune response IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005164 tumor necrosis factor receptor binding IEA


Pathways (from Reactome)
Pathway description
TNFR2 non-canonical NF-kB pathway
TNFs bind their physiological receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000011389 TRAF3 / TNF receptor associated factor 3 / Q13114* / Q60803*  / complex
 ENSGALG00000017186 BIRC2 / BIRC3* / Q62210* / Q13489* / Q13490* / baculoviral IAP repeat containing 2* / baculoviral IAP repeat containing 3* / Baculoviral IAP repeat-containing protein 2 *  / complex
 ENSGALG00000016852 TNFSF13B / Q9WU72* / Q9Y275* / TNF superfamily member 13b* / tumor necrosis factor (ligand) superfamily, member 13b*  / complex
 ENSGALG00000024122 TNFRSF13B / tumor necrosis factor receptor superfamily member 13B / O14836* / Q9ET35* / TNF receptor superfamily member 13B*  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr