ENSDARG00000099483


Danio rerio

Features
Gene ID: ENSDARG00000099483
  
Biological name :vdra
  
Synonyms : vdra / vitamin D receptor a
  
Possible biological names infered from orthology : P11473 / P48281 / VDR / vitamin D (1,25-dihydroxyvitamin D3) receptor / vitamin D receptor
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 45822935
Gene end: 45825632
  
Corresponding Affymetrix probe sets: Dr.8079.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000134553
swissprot - F1REC6
ZFIN ID - ZDB-GENE-000210-31
Ensembl - ENSDARG00000099483
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VDRENSG00000111424Homo sapiens
 VdrENSMUSG00000022479Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vdrb / Q1L673 / vitamin D receptor b / VDR* / P48281* / P11473* / vitamin D receptor* / vitamin D (1,25-dihydroxyvitamin D3) receptor*ENSDARG0000007072189
nr1i2 / nuclear receptor subfamily 1, group I, member 2 / O54915* / O75469*ENSDARG0000002976637
nr1h3 / nuclear receptor subfamily 1, group H, member 3 / Q13133*ENSDARG0000009843933
nr1h4 / nuclear receptor subfamily 1, group H, member 4 / Q60641* / Q96RI1* / Bile acid receptor *ENSDARG0000005774129
thrb / Q9PVE4 / thyroid hormone receptor beta / P10828* / P37242*ENSDARG0000002116324
rarga / Q91392 / retinoic acid receptor gamma a / RARG* / P18911* / P13631* / retinoic acid receptor gamma*ENSDARG0000003411724
rarab / Q7ZTI3 / retinoic acid receptor, alpha b / RARA* / P11416* / P10276* / retinoic acid receptor alpha*ENSDARG0000003489324
thrab / thyroid hormone receptor alpha b / THRA* / P63058* / P10827* / thyroid hormone receptor, alpha*ENSDARG0000005265424
rargb / retinoic acid receptor, gamma b / RARG* / P13631* / retinoic acid receptor gamma*ENSDARG0000005400324
raraa / Q90271 / retinoic acid receptor, alpha a / RARA* / P11416* / P10276* / retinoic acid receptor alpha*ENSDARG0000005678324
thraa / Q98867 / thyroid hormone receptor alpha a / THRA* / P63058* / P10827* / thyroid hormone receptor, alpha*ENSDARG0000000015123
nr1h5 / nuclear receptor subfamily 1, group H, member 5ENSDARG0000003104619
CABZ01088036.1 / VDR* / P11473* / vitamin D receptor*ENSDARG000001129232


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001723  Nuclear hormone receptor
 IPR001728  Thyroid hormone receptor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0070561 vitamin D receptor signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0008434 calcitriol receptor activity IEA


Pathways (from Reactome)
Pathway description
Vitamin D (calciferol) metabolism
Nuclear Receptor transcription pathway
SUMOylation of intracellular receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism decreased amount , abnormal
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 ZFA:0005028 ventral wall of dorsal aorta ventral wall of dorsal aorta decreased amount , abnormal
ventral wall of dorsal aorta has fewer parts of type hematopoietic multipotent progenitor cell , abnormal
ventral wall of dorsal aorta has fewer parts of type hematopoietic stem cell , abnormal
ventral wall of dorsal aorta has extra parts of type hematopoietic stem cell , abnormal
ventral wall of dorsal aorta has extra parts of type hematopoietic multipotent progenitor cell , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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