ENSDARG00000099554


Danio rerio
secsec16bcopiivesicleancestralcoatomerelementcoatassemblyproteincoatinggolgimembranecellularcomponentmolecularfunctioncopii-mediatedtransport

Features
Gene ID: ENSDARG00000099554
  
Biological name :sec16b
  
Synonyms : sec16b / SEC16 homolog B, endoplasmic reticulum export factor
  
Possible biological names infered from orthology : Protein transport protein Sec16B / Q91XT4 / Q96JE7
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 23891230
Gene end: 23931442
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000135439
Ensembl peptide - ENSDARP00000135911
NCBI entrez gene - 553356     See in Manteia.
swissprot - F1QN96
ZFIN ID - ZDB-GENE-050208-274
Ensembl - ENSDARG00000099554
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEC16BENSGALG00000004424Gallus gallus
 Q96JE7ENSG00000120341Homo sapiens
 Q91XT4ENSMUSG00000026589Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR024298  Ancestral coatomer element 1, Sec16/Sec31
 IPR024880  COPII coat assembly protein, Sec16


Gene Ontology (GO)
cellular component organizationcellular component biogenesisestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationcellular component organizationcellular component organizationcellular component biogenesiscellular component biogenesisestablishment of localizationestablishment of localizationcellular localizationcellular localization
cellmembraneorganellecellmembraneorganellecellmembraneorganellecellmembraneorganellecellmembraneorganellecellmembraneorganellecellmembraneorganellecellmembraneorganellecellmembraneorganellecellmembraneorganellecellcellmembranemembraneorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0048208 COPII vesicle coating IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000100435 Q7SXP0 / sec22bb / SEC22 homolog B, vesicle trafficking protein b / SEC22B* / O08547* / O75396* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/p...  / complex / reaction
 ENSDARG00000003641 tfg / trk-fused gene / Q92734*  / complex
 ENSDARG00000054807 sec13 / SEC13 homolog, nuclear pore and COPII coat complex component / P55735* / Q9D1M0*  / complex / reaction
 ENSDARG00000021082 sec31a / SEC31 homolog A, COPII coat complex component / O94979* / Q3UPL0* / Protein transport protein Sec31A *  / complex / reaction
 ENSDARG00000071906 sec24b / SEC24 homolog B, COPII coat complex component / O95487* / Sec24 related gene family, member B (S. cerevisiae)*  / complex
 ENSDARG00000103516 sec24c / SEC24 homolog C, COPII coat complex component / P53992* / Sec24 related gene family, member C (S. cerevisiae)*  / complex
 ENSDARG00000104230 Q7SZE5 / sec23a / Sec23 homolog A, COPII coat complex component / Q15436* / Q01405* / Protein transport protein Sec23A * / Sec23 homolog A, coat complex II component*  / complex
 ENSDARG00000104375 sec24a / SEC24 homolog A, COPII coat complex component / O95486*  / complex
 ENSDARG00000103403 sar1b / secretion associated, Ras related GTPase 1B / Q9Y6B6*  / complex






 

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