ENSDARG00000101680


Danio rerio

Features
Gene ID: ENSDARG00000101680
  
Biological name :arl1
  
Synonyms : ADP-ribosylation factor-like 1 / arl1
  
Possible biological names infered from orthology : ADP ribosylation factor like GTPase 1 / ADP-ribosylation factor-like protein 1 / P40616 / P61211
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 5906958
Gene end: 5913338
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000132630
Ensembl peptide - ENSDARP00000150582
NCBI entrez gene - 436746     See in Manteia.
swissprot - Q6DGK1
ZFIN ID - ZDB-GENE-040718-175
Ensembl - ENSDARG00000101680
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARL1ENSGALG00000011651Gallus gallus
 ARL1ENSG00000120805Homo sapiens
 Arl1ENSMUSG00000060904Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arl8 / ADP-ribosylation factor-like 8 / ARL5B* / Q96KC2* / ADP ribosylation factor like GTPase 5B*ENSDARG0000009470948
arl5a / ADP-ribosylation factor-like 5A / Q80ZU0* / Q9Y689* / ADP ribosylation factor like GTPase 5A* / ADP-ribosylation factor-like protein 5A *ENSDARG0000001862747
arl5c / ADP-ribosylation factor-like 5C / Q6P068* / A6NH57* / ADP ribosylation factor like GTPase 5C* / ADP-ribosylation factor-like protein 5C *ENSDARG0000003571946
arl6 / Q5M9P8 / ADP-ribosylation factor-like 6 / O88848* / Q9H0F7* / ADP ribosylation factor like GTPase 6* / ADP-ribosylation factor-like protein 6 *ENSDARG0000003205638


Protein motifs (from Interpro)
Interpro ID Name
 IPR005225  Small GTP-binding protein domain
 IPR006689  Small GTPase superfamily, ARF/SAR type
 IPR024156  Small GTPase superfamily, ARF type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007030 Golgi organization ISS
 biological_processGO:0009404 toxin metabolic process ISS
 biological_processGO:0031584 activation of phospholipase D activity ISS
 biological_processGO:0034067 protein localization to Golgi apparatus ISS
 biological_processGO:0042147 retrograde transport, endosome to Golgi ISS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005794 Golgi apparatus ISS
 cellular_componentGO:0005802 trans-Golgi network ISS
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity ISS
 molecular_functionGO:0005525 GTP binding ISS
 molecular_functionGO:0008047 enzyme activator activity ISS


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000002217 scocb / short coiled-coil protein b / SCOC* / Q9UIL1* / Q78YZ6* / short coiled-coil protein*  / complex / reaction
 ENSDARG00000087333 scoca / Q08BG7 / short coiled-coil protein a / SCOC* / Q9UIL1* / Q78YZ6* / short coiled-coil protein*  / complex / reaction
 ENSDARG00000057857 arfrp1 / ADP-ribosylation factor related protein 1 / Q13795* / Q8BXL7*  / complex / reaction
 ENSDARG00000017606 sys1 / Sys1 golgi trafficking protein / Q8N2H4* / Q78S06* / Gm20458* / SYS1-DBNDD2* / SYS1-DBNDD2 readthrough (NMD candidate)* / SYS1 Golgi-localized integral membrane protein homolog (S. c...  / complex / reaction






 

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