ENSDARG00000002217


Danio rerio

Features
Gene ID: ENSDARG00000002217
  
Biological name :scocb
  
Synonyms : scocb / short coiled-coil protein b
  
Possible biological names infered from orthology : Q78YZ6 / Q9UIL1 / SCOC / short coiled-coil protein
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 48932235
Gene end: 48939560
  
Corresponding Affymetrix probe sets: Dr.11637.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000023570
NCBI entrez gene - 791709     See in Manteia.
RefSeq - NM_001005966
RefSeq Peptide - NP_001005966
swissprot - A0A0H2UKD1
ZFIN ID - ZDB-GENE-041010-41
Ensembl - ENSDARG00000002217
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCOCENSGALG00000009813Gallus gallus
 SCOCENSG00000153130Homo sapiens
 ScocENSMUSG00000063253Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
scoca / Q08BG7 / short coiled-coil protein a / SCOC* / Q9UIL1* / Q78YZ6* / short coiled-coil protein*ENSDARG0000008733391


Protein motifs (from Interpro)
Interpro ID Name
 IPR019357  Short coiled-coil protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000101680 arl1 / ADP-ribosylation factor-like 1 / P40616* / P61211* / ADP ribosylation factor like GTPase 1* / ADP-ribosylation factor-like protein 1 *  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr