ENSDARG00000087333


Danio rerio

Features
Gene ID: ENSDARG00000087333
  
Biological name :scoca
  
Synonyms : Q08BG7 / scoca / short coiled-coil protein a
  
Possible biological names infered from orthology : Q78YZ6 / Q9UIL1 / SCOC / short coiled-coil protein
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 40562540
Gene end: 40569613
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000107068
Ensembl peptide - ENSDARP00000120814
Ensembl peptide - ENSDARP00000116436
NCBI entrez gene - 562638     See in Manteia.
swissprot - B8A5C8
swissprot - B8A5C7
swissprot - Q08BG7
ZFIN ID - ZDB-GENE-061013-114
Ensembl - ENSDARG00000087333
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCOCENSGALG00000009813Gallus gallus
 SCOCENSG00000153130Homo sapiens
 ScocENSMUSG00000063253Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
scocb / short coiled-coil protein b / SCOC* / Q9UIL1* / Q78YZ6* / short coiled-coil protein*ENSDARG0000000221761


Protein motifs (from Interpro)
Interpro ID Name
 IPR019357  Short coiled-coil protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016239 positive regulation of macroautophagy ISS
 biological_processGO:0061635 regulation of protein complex stability ISS
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000101680 arl1 / ADP-ribosylation factor-like 1 / P40616* / P61211* / ADP ribosylation factor like GTPase 1* / ADP-ribosylation factor-like protein 1 *  / complex / reaction






 

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