ENSG00000167972


Homo sapiens

Features
Gene ID: ENSG00000167972
  
Biological name :ABCA3
  
Synonyms : ABCA3 / ATP binding cassette subfamily A member 3 / Q99758
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: p13.3
Gene start: 2275881
Gene end: 2340746
  
Corresponding Affymetrix probe sets: 204343_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000371818
Ensembl peptide - ENSP00000454397
Ensembl peptide - ENSP00000301732
NCBI entrez gene - 21     See in Manteia.
OMIM - 601615
RefSeq - NM_001089
RefSeq Peptide - NP_001080
swissprot - H0Y3H2
swissprot - Q99758
Ensembl - ENSG00000167972
  
Related genetic diseases (OMIM): 610921 - Surfactant metabolism dysfunction, pulmonary, 3, 610921
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 abca3bENSDARG00000100524Danio rerio
 ABCA3ENSGALG00000037837Gallus gallus
 Abca3ENSMUSG00000024130Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABCA1 / O95477 / ATP binding cassette subfamily A member 1ENSG0000016502936
ABCA4 / P78363 / ATP binding cassette subfamily A member 4ENSG0000019869136
ABCA7 / Q8IZY2 / ATP binding cassette subfamily A member 7ENSG0000006468735
ABCA2 / Q9BZC7 / ATP binding cassette subfamily A member 2ENSG0000010733135
ABCA13 / Q86UQ4 / ATP binding cassette subfamily A member 13ENSG0000017986932
ABCA12 / Q86UK0 / ATP binding cassette subfamily A member 12ENSG0000014445231
ABCA9 / Q8IUA7 / ATP binding cassette subfamily A member 9ENSG0000015425824
ABCA5 / Q8WWZ7 / ATP binding cassette subfamily A member 5ENSG0000015426524
ABCA8 / O94911 / ATP binding cassette subfamily A member 8ENSG0000014133823
ABCA6 / Q8N139 / ATP binding cassette subfamily A member 6ENSG0000015426223
ABCA10 / Q8WWZ4 / ATP binding cassette subfamily A member 10ENSG0000015426322


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR017871  ABC transporter, conserved site
 IPR026082  ABC transporter A
 IPR026969  ATP-binding cassette sub-family A member 3
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006869 lipid transport IBA
 biological_processGO:0042493 response to drug TAS
 biological_processGO:0044267 cellular protein metabolic process TAS
 biological_processGO:0051384 response to glucocorticoid IEA
 biological_processGO:0055085 transmembrane transport TAS
 cellular_componentGO:0005615 extracellular space HDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0016021 integral component of membrane TAS
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IBA
 cellular_componentGO:0097208 alveolar lamellar body IDA
 cellular_componentGO:0097232 lamellar body membrane TAS
 cellular_componentGO:0097233 alveolar lamellar body membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005215 transporter activity TAS
 molecular_functionGO:0005319 lipid transporter activity TAS
 molecular_functionGO:0005524 ATP binding TAS
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances TAS


Pathways (from Reactome)
Pathway description
ABC transporters in lipid homeostasis
Defective ABCA3 causes pulmonary surfactant metabolism dysfunction type 3 (SMDP3)
Surfactant metabolism
Defective ABCA3 causes pulmonary surfactant metabolism dysfunction 3 (SMDP3)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001508 Failure to thrive 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002098 Respiratory distress 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002110 Bronchiectasis 
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 HP:0002206 Pulmonary fibrosis 
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 HP:0002789 Tachypnea 
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 HP:0002875 Exertional dyspnea 
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 HP:0002878 Early respiratory failure 
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 HP:0003577 Onset at birth 
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 HP:0005942 Desquamative interstitial pneumonitis 
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 HP:0006517 Congenital alveolar proteinosis 
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 HP:0010444 Pulmonary insufficiency "The retrograde (backwards) flow of blood through the pulmonary valve into the right ventricle during diastole." [HPO:curators]
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 HP:0012735 Cough "A sudden, audible expulsion of air from the lungs through a partially closed glottis, preceded by inhalation." [HPO:probinson]
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 HP:0025175 Honeycomb lung "Extensive interstitial fibrosis with alveolar disruption and bronchiolectasis." []
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 HP:0025179 Ground-glass opacification "A descriptive term that is applied to computer tomography imaging and that refers to a hazy area of increased attenuation in the lung with preserved bronchial and vascular markings." []
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 HP:0025390 Reticular pattern on pulmonary HRCT "On pulmonary high-resolution computed tomography, reticular pattern is characterised by innumerable interlacing shadows suggesting a mesh." [PMID:23247773]
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 HP:0030830 Rales "Abnormal breath sounds characterized by discontinuous clicking or rattling." [UToronto:chum]
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 HP:0100759 Clubbing of fingers "Terminal broadening of the fingers (distal phalanges of the fingers)." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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