ENSG00000144452


Homo sapiens

Features
Gene ID: ENSG00000144452
  
Biological name :ABCA12
  
Synonyms : ABCA12 / ATP binding cassette subfamily A member 12 / Q86UK0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q35
Gene start: 214931542
Gene end: 215138428
  
Corresponding Affymetrix probe sets: 215465_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000400231
Ensembl peptide - ENSP00000272895
Ensembl peptide - ENSP00000374312
NCBI entrez gene - 26154     See in Manteia.
OMIM - 607800
RefSeq - XM_011510951
RefSeq - NM_015657
RefSeq - NM_173076
RefSeq Peptide - NP_056472
RefSeq Peptide - NP_775099
swissprot - Q86UK0
swissprot - E9PBK1
Ensembl - ENSG00000144452
  
Related genetic diseases (OMIM): 242500 - Ichthyosis, congenital, autosomal recessive 4B (harlequin), 242500
  601277 - Ichthyosis, congenital, autosomal recessive 4A, 601277
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 abca12ENSDARG00000074749Danio rerio
 ABCA12ENSGALG00000003553Gallus gallus
 Abca12ENSMUSG00000050296Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABCA13 / Q86UQ4 / ATP binding cassette subfamily A member 13ENSG0000017986937
ABCA1 / O95477 / ATP binding cassette subfamily A member 1ENSG0000016502928
ABCA4 / P78363 / ATP binding cassette subfamily A member 4ENSG0000019869127
ABCA7 / Q8IZY2 / ATP binding cassette subfamily A member 7ENSG0000006468726
ABCA2 / Q9BZC7 / ATP binding cassette subfamily A member 2ENSG0000010733126
ABCA3 / Q99758 / ATP binding cassette subfamily A member 3ENSG0000016797220
ABCA8 / O94911 / ATP binding cassette subfamily A member 8ENSG0000014133815
ABCA9 / Q8IUA7 / ATP binding cassette subfamily A member 9ENSG0000015425815
ABCA6 / Q8N139 / ATP binding cassette subfamily A member 6ENSG0000015426215
ABCA10 / Q8WWZ4 / ATP binding cassette subfamily A member 10ENSG0000015426315
ABCA5 / Q8WWZ7 / ATP binding cassette subfamily A member 5ENSG0000015426515


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR017871  ABC transporter, conserved site
 IPR026082  ABC transporter A
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030371  ATP-binding cassette subfamily A member 12


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0010875 positive regulation of cholesterol efflux IDA
 biological_processGO:0019725 cellular homeostasis NAS
 biological_processGO:0030216 keratinocyte differentiation IEA
 biological_processGO:0031424 keratinization IEA
 biological_processGO:0032940 secretion by cell IMP
 biological_processGO:0033700 phospholipid efflux IMP
 biological_processGO:0035627 ceramide transport IEA
 biological_processGO:0043129 surfactant homeostasis IEA
 biological_processGO:0045055 regulated exocytosis IMP
 biological_processGO:0048286 lung alveolus development IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0055088 lipid homeostasis IEA
 biological_processGO:0061436 establishment of skin barrier IEA
 biological_processGO:0072659 protein localization to plasma membrane IMP
 biological_processGO:2000010 positive regulation of protein localization to cell surface IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IBA
 cellular_componentGO:0097209 epidermal lamellar body IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005102 signaling receptor binding IPI
 molecular_functionGO:0005215 transporter activity IEA
 molecular_functionGO:0005319 lipid transporter activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding NAS
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0034040 lipid-transporting ATPase activity IC
 molecular_functionGO:0034191 apolipoprotein A-I receptor binding IPI
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA


Pathways (from Reactome)
Pathway description
ABC transporters in lipid homeostasis
Defective ABCA12 causes autosomal recessive congenital ichthyosis type 4B


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000232 Everted lower lip 
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 HP:0000364 Hearing abnormality 
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 HP:0000365 Hearing loss 
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 HP:0000389 Chronic otitis media 
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 HP:0000457 Flat nose 
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 HP:0000491 Keratitis "Inflammation of the cornea." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000520 Proptosis 
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 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
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 HP:0000707 Neurological abnormality "An abnormality of the central or peripheral nervous system." [HPO:curators]
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 HP:0000958 Dry skin 
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 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001006 Hypotrichosis "Reduced or lacking hair growth." [HPO:curators]
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 HP:0001019 Erythroderma "An inflammatory exfoliative dermatosis involving nearly all of the surface of the skin. Erythroderma develops suddenly. A patchy erythema may generalize and spread to affect most of the skin. Scaling may appear in 2-6 days and be accompanied by hot, red, dry skin, malaise, and fever." [HPO:probinson]
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 HP:0001161 Polydactyly (hands) 
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 HP:0001217 Clubbing "Non-edematous swelling/broadening of the soft tissue of the fingertips in all dimensions." [HPO:curators]
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 HP:0001376 Decreased mobility of joints 
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 HP:0001438 Abnormality of the abdomen "Abnormality of the abdomen ("belly"), that is, the part of the body between the pelvis and the thorax." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001597 Abnormality of the nails "Abnormality of the fingernails or toenails." [HPO:curators]
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 HP:0001622 Premature birth 
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 HP:0001645 Sudden cardiac death 
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 HP:0001820 Leukonychia 
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 HP:0001829 Polydactyly (feet) 
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 HP:0001944 Dehydration 
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 HP:0002047 Malignant hyperthermia "Malignant hyperthermia is characterized by a rapid increase in temperature to 39-42 degrees C in response to inhalational anesthetics such as halothane or to muscle relaxants such as succinylcholine." [HPO:curators]
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 HP:0002063 Rigidity 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0007431 Congenital ichthyosiform erythroderma 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0008070 Sparse hair 
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 HP:0009381 Hypoplastic/small fingers 
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 HP:0011039 Abnormality of the helix "An abnormality of the `helix` (FMA:60992)." [HPO:probinson]
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 HP:0012472 Eclabion "A turning outward of the lip or lips, that is, eversion of the lips." [HPO:probinson]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100679 Lack of skin elasticity 
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 HP:0100716 Autoagression "Aggression towards oneself." [HPO:sdoelken]
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 HP:0100758 Gangrene "A serious and potentially life-threatening condition that arises when a considerable mass of body tissue dies (necrosis)." [ISBN:9780781770873]
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 HP:0100806 Sepsis 
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 HP:0100840 Aplasia/Hypoplasia of the eyebrow "Absence or underdevelopment of the eyebrow." [HPO:probinson]
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 HP:0200020 Corneal erosions "Erosions or Abbrasions of the cornea s outermost layer of epithelial cells." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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