ENSG00000183423


Homo sapiens

Features
Gene ID: ENSG00000183423
  
Biological name :LRIT3
  
Synonyms : leucine rich repeat, Ig-like and transmembrane domains 3 / LRIT3 / Q3SXY7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q25
Gene start: 109848202
Gene end: 109872315
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSP00000328222
Ensembl peptide - ENSP00000469759
NCBI entrez gene - 345193     See in Manteia.
OMIM - 615004
RefSeq - NM_198506
RefSeq - XM_017008167
RefSeq Peptide - NP_940908
swissprot - A0A0A0MR64
swissprot - Q3SXY7
Ensembl - ENSG00000183423
  
Related genetic diseases (OMIM): 615058 - Night blindness, congenital stationary (complete), 1F, autosomal recessive, 615058
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lrit3aENSDARG00000055463Danio rerio
 lrit3bENSDARG00000057054Danio rerio
 LRIT3ENSGALG00000026627Gallus gallus
 Lrit3ENSMUSG00000093865Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LRIT1 / Q9P2V4 / leucine rich repeat, Ig-like and transmembrane domains 1ENSG0000014860232
LRIT2 / A6NDA9 / leucine rich repeat, Ig-like and transmembrane domains 2ENSG0000020403322
ISLR2 / Q6UXK2 / immunoglobulin superfamily containing leucine rich repeat 2ENSG0000016717820
ISLR / O14498 / immunoglobulin superfamily containing leucine rich repeatENSG0000012900914


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013783  Immunoglobulin-like fold
 IPR032675  Leucine-rich repeat domain superfamily
 IPR036116  Fibronectin type III superfamily
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0040036 regulation of fibroblast growth factor receptor signaling pathway IDA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043204 perikaryon IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000545 Myopia 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0007642 Congenital stationary night blindness 
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 HP:0007663 Decreased central vision 
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 HP:0007766 Hypoplastic optic disks 
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 HP:0008002 Macular pigmentary changes 
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 HP:0011003 Severe Myopia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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