ENSGALG00000002093


Gallus gallus

Features
Gene ID: ENSGALG00000002093
  
Biological name :NR2E3
  
Synonyms : NR2E3 / photoreceptor-specific nuclear receptor
  
Possible biological names infered from orthology : nuclear receptor subfamily 2 group E member 3 / Q9QXZ7 / Q9Y5X4
  
Species: Gallus gallus
  
Chr. number: 10
Strand: 1
Band:
Gene start: 1323001
Gene end: 1326680
  
Corresponding Affymetrix probe sets: Gga.906.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000003259
NCBI entrez gene - 395289     See in Manteia.
RefSeq - NM_204594
RefSeq Peptide - NP_989925
swissprot - F1P0M4
Ensembl - ENSGALG00000002093
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nr2e3ENSDARG00000045904Danio rerio
 NR2E3ENSG00000278570Homo sapiens
 Nr2e3ENSMUSG00000032292Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NR2E1 / nuclear receptor subfamily 2 group E member 1 / Q64104* / Q9Y466*ENSGALG0000001530541
NR2F1 / nuclear receptor subfamily 2 group F member 1 / P10589*ENSGALG0000002790737
NR2F2 / COUP transcription factor 2 / P24468* / P43135* / nuclear receptor subfamily 2 group F member 2*ENSGALG0000000700036
NR2F6 / nuclear receptor subfamily 2 group F member 6 / P10588* / P43136*ENSGALG0000004301036
RXRG / retinoic acid receptor RXR-gamma / P28705* / P48443* / retinoid X receptor gamma*ENSGALG0000004073031
NR2C2 / nuclear receptor subfamily 2 group C member 2 / P49116* / P49117*ENSGALG0000000851930
NR2C1 / nuclear receptor subfamily 2 group C member 1 / P13056* / Q505F1*ENSGALG0000001132729
HNF4A / hepatocyte nuclear factor 4-alpha / P41235* / P49698*ENSGALG0000000428528
HNF4beta / hepatic nuclear factor 4beta ENSGALG0000000570827
HNF4G / hepatocyte nuclear factor 4 gamma / Q14541*ENSGALG0000004262127
RXRA / retinoid X receptor alpha / P19793* / P28700*ENSGALG0000004205514


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003068  Transcription factor COUP
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0042462 eye photoreceptor cell development IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0045872 positive regulation of rhodopsin gene expression IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0004879 nuclear receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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