ENSGALG00000007641


Gallus gallus

Features
Gene ID: ENSGALG00000007641
  
Biological name :LDB1
  
Synonyms : LDB1 / LIM domain-binding protein 1 / O42252
  
Possible biological names infered from orthology : LIM domain binding 1 / P70662 / Q86U70
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 22506197
Gene end: 22524989
  
Corresponding Affymetrix probe sets: Gga.377.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000061942
Ensembl peptide - ENSGALP00000012348
Ensembl peptide - ENSGALP00000053833
NCBI entrez gene - 395952     See in Manteia.
RefSeq - XM_015288583
RefSeq - NM_205070
RefSeq - XM_015288581
RefSeq - XM_015288582
RefSeq Peptide - NP_990401
swissprot - O42252
swissprot - F1NKP2
swissprot - A0A1D5PLW2
Ensembl - ENSGALG00000007641
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ldb1aENSDARG00000103158Danio rerio
 ldb1aENSDARG00000010137Danio rerio
 LDB1ENSG00000198728Homo sapiens
 Ldb1ENSMUSG00000025223Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LDB2 / LIM domain-binding protein 2 / O43679* / O55203* / LIM domain binding 2* / Mus musculus LIM domain binding 2 (Ldb2), transcript variant 5, mRNA.*ENSGALG0000001448568


Protein motifs (from Interpro)
Interpro ID Name
 IPR029005  LIM-domain binding protein/SEUSS
 IPR030167  LIM domain-binding protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IEA
 biological_processGO:0001702 gastrulation with mouth forming second IEA
 biological_processGO:0001942 hair follicle development IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0009948 anterior/posterior axis specification IEA
 biological_processGO:0010669 epithelial structure maintenance IEA
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0021549 cerebellum development IEA
 biological_processGO:0021702 cerebellar Purkinje cell differentiation IEA
 biological_processGO:0022607 cellular component assembly IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0030334 regulation of cell migration IEA
 biological_processGO:0032784 regulation of DNA-templated transcription, elongation IEA
 biological_processGO:0035019 somatic stem cell population maintenance IEA
 biological_processGO:0043549 regulation of kinase activity IEA
 biological_processGO:0043973 histone H3-K4 acetylation IEA
 biological_processGO:0045647 negative regulation of erythrocyte differentiation IEA
 biological_processGO:0045785 positive regulation of cell adhesion IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0046985 positive regulation of hemoglobin biosynthetic process IEA
 biological_processGO:0051893 regulation of focal adhesion assembly IEA
 biological_processGO:0060322 head development IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0031252 cell leading edge IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:1990907 beta-catenin-TCF complex IEA
 molecular_functionGO:0000989 transcription factor activity, transcription factor binding IEA
 molecular_functionGO:0001102 RNA polymerase II activating transcription factor binding IEA
 molecular_functionGO:0001158 enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0030274 LIM domain binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043621 protein self-association IEA


Pathways (from Reactome)
Pathway description
RUNX1 regulates transcription of genes involved in differentiation of HSCs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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