ENSDARG00000103158


Danio rerio

Features
Gene ID: ENSDARG00000103158
  
Biological name :ldb1b
  
Synonyms : ldb1a / ldb1b / LIM-domain binding 1b
  
Possible biological names infered from orthology : LDB1 / LIM domain binding 1 / LIM domain-binding protein 1 / P70662 / Q86U70
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 44953598
Gene end: 44999858
  
Corresponding Affymetrix probe sets: Dr.598.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000145498
Ensembl peptide - ENSDARP00000107739
Ensembl peptide - ENSDARP00000132230
swissprot - A0A0G2KIT5
swissprot - F1R491
swissprot - O73712
ZFIN ID - ZDB-GENE-990415-135
ZFIN ID - ZDB-GENE-990415-138
Ensembl - ENSDARG00000103158
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LDB1ENSGALG00000007641Gallus gallus
 LDB1ENSG00000198728Homo sapiens
 Ldb1ENSMUSG00000025223Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ldb1a / O73715 / LIM domain binding 1a / LDB1* / P70662* / Q86U70* / LIM domain binding 1* / LIM domain-binding protein 1 *ENSDARG0000001013785
ldb2a / LIM domain binding 2a / LDB2* / O43679* / O55203* / LIM domain binding 2* / Mus musculus LIM domain binding 2 (Ldb2), transcript variant 5, mRNA.*ENSDARG0000001957965
ldb2b / LIM domain binding 2b / LDB2* / O43679* / O55203* / LIM domain binding 2* / Mus musculus LIM domain binding 2 (Ldb2), transcript variant 5, mRNA.*ENSDARG0000003489654


Protein motifs (from Interpro)
Interpro ID Name
 IPR029005  LIM-domain binding protein/SEUSS
 IPR030167  LIM domain-binding protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000989 transcription factor activity, transcription factor binding IEA
 molecular_functionGO:0030274 LIM domain binding IEA


Pathways (from Reactome)
Pathway description
RUNX1 regulates transcription of genes involved in differentiation of HSCs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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