ENSDARG00000034896


Danio rerio

Features
Gene ID: ENSDARG00000034896
  
Biological name :ldb2b
  
Synonyms : ldb2b / LIM domain binding 2b
  
Possible biological names infered from orthology : LDB2 / LIM domain binding 2 / Mus musculus LIM domain binding 2 (Ldb2), transcript variant 5, mRNA. / O43679 / O55203
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 22805398
Gene end: 22834824
  
Corresponding Affymetrix probe sets: Dr.600.1.S1_at (Zebrafish Array)   NM_131315_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000043555
NCBI entrez gene - 30578     See in Manteia.
RefSeq - NM_131315
RefSeq Peptide - NP_571390
swissprot - O73714
ZFIN ID - ZDB-GENE-990415-137
Ensembl - ENSDARG00000034896
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LDB2ENSGALG00000014485Gallus gallus
 LDB2ENSG00000169744Homo sapiens
 Ldb2ENSMUSG00000039706Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ldb2a / LIM domain binding 2a / LDB2* / O43679* / O55203* / LIM domain binding 2* / Mus musculus LIM domain binding 2 (Ldb2), transcript variant 5, mRNA.*ENSDARG0000001957971
ldb1a / O73715 / LIM domain binding 1a / LDB1* / P70662* / Q86U70* / LIM domain binding 1* / LIM domain-binding protein 1 *ENSDARG0000001013758
ldb1a / ldb1b / LIM-domain binding 1b / LDB1* / Q86U70* / LIM domain binding 1*ENSDARG0000010315858


Protein motifs (from Interpro)
Interpro ID Name
 IPR029005  LIM-domain binding protein/SEUSS


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000989 transcription factor activity, transcription factor binding IEA
 molecular_functionGO:0030274 LIM domain binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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