ENSDARG00000019579


Danio rerio

Features
Gene ID: ENSDARG00000019579
  
Biological name :ldb2a
  
Synonyms : ldb2a / LIM domain binding 2a
  
Possible biological names infered from orthology : LDB2 / LIM domain binding 2 / Mus musculus LIM domain binding 2 (Ldb2), transcript variant 5, mRNA. / O43679 / O55203
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 46678711
Gene end: 46832825
  
Corresponding Affymetrix probe sets: Dr.16347.1.A1_at (Zebrafish Array)   Dr.26087.1.A1_at (Zebrafish Array)   Dr.599.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000124510
swissprot - F8W338
ZFIN ID - ZDB-GENE-990415-136
Ensembl - ENSDARG00000019579
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LDB2ENSGALG00000014485Gallus gallus
 LDB2ENSG00000169744Homo sapiens
 Ldb2ENSMUSG00000039706Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ldb2b / LIM domain binding 2b / LDB2* / O43679* / O55203* / LIM domain binding 2* / Mus musculus LIM domain binding 2 (Ldb2), transcript variant 5, mRNA.*ENSDARG0000003489662
ldb1a / ldb1b / LIM-domain binding 1b / LDB1* / Q86U70* / LIM domain binding 1*ENSDARG0000010315861
ldb1a / O73715 / LIM domain binding 1a / LDB1* / P70662* / Q86U70* / LIM domain binding 1* / LIM domain-binding protein 1 *ENSDARG0000001013759


Protein motifs (from Interpro)
Interpro ID Name
 IPR029005  LIM-domain binding protein/SEUSS
 IPR030174  LIM domain-binding protein 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0030514 negative regulation of BMP signaling pathway IMP
 biological_processGO:1900108 negative regulation of nodal signaling pathway IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000989 transcription factor activity, transcription factor binding IEA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0030274 LIM domain binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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