ENSDARG00000010137


Danio rerio

Features
Gene ID: ENSDARG00000010137
  
Biological name :ldb1a
  
Synonyms : ldb1a / LIM domain binding 1a / O73715
  
Possible biological names infered from orthology : LDB1 / LIM domain binding 1 / LIM domain-binding protein 1 / P70662 / Q86U70
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 28705143
Gene end: 28748749
  
Corresponding Affymetrix probe sets: Dr.18085.1.S1_at (Zebrafish Array)   Dr.21122.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000003158
Ensembl peptide - ENSDARP00000125601
Ensembl peptide - ENSDARP00000153482
NCBI entrez gene - 30579     See in Manteia.
swissprot - O73715
ZFIN ID - ZDB-GENE-990415-138
Ensembl - ENSDARG00000010137
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LDB1ENSGALG00000007641Gallus gallus
 LDB1ENSG00000198728Homo sapiens
 Ldb1ENSMUSG00000025223Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ldb1a / ldb1b / LIM-domain binding 1b / LDB1* / Q86U70* / LIM domain binding 1*ENSDARG0000010315893
ldb2a / LIM domain binding 2a / LDB2* / O43679* / O55203* / LIM domain binding 2* / Mus musculus LIM domain binding 2 (Ldb2), transcript variant 5, mRNA.*ENSDARG0000001957969
ldb2b / LIM domain binding 2b / LDB2* / O43679* / O55203* / LIM domain binding 2* / Mus musculus LIM domain binding 2 (Ldb2), transcript variant 5, mRNA.*ENSDARG0000003489660


Protein motifs (from Interpro)
Interpro ID Name
 IPR029005  LIM-domain binding protein/SEUSS
 IPR030167  LIM domain-binding protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0000989 transcription factor activity, transcription factor binding IEA
 molecular_functionGO:0030274 LIM domain binding IDA
 molecular_functionGO:0046983 protein dimerization activity IDA


Pathways (from Reactome)
Pathway description
RUNX1 regulates transcription of genes involved in differentiation of HSCs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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