ENSGALG00000014485


Gallus gallus

Features
Gene ID: ENSGALG00000014485
  
Biological name :LDB2
  
Synonyms : LDB2 / LIM domain-binding protein 2
  
Possible biological names infered from orthology : LIM domain binding 2 / Mus musculus LIM domain binding 2 (Ldb2), transcript variant 5, mRNA. / O43679 / O55203
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 76744861
Gene end: 76951561
  
Corresponding Affymetrix probe sets: Gga.3673.1.S1_at (Chicken Array)   Gga.3673.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000060862
Ensembl peptide - ENSGALP00000023335
NCBI entrez gene - 395631     See in Manteia.
RefSeq - XM_015285735
RefSeq - XM_015285732
RefSeq - XM_015285733
RefSeq - XM_015285734
RefSeq - NM_204829
RefSeq - XM_015285728
RefSeq - XM_015285730
RefSeq - XM_015285731
RefSeq Peptide - NP_990160
swissprot - F1NGI1
swissprot - A0A1L1RPY9
Ensembl - ENSGALG00000014485
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ldb2aENSDARG00000019579Danio rerio
 ldb2bENSDARG00000034896Danio rerio
 LDB2ENSG00000169744Homo sapiens
 Ldb2ENSMUSG00000039706Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LDB1 / O42252 / LIM domain-binding protein 1 / P70662* / Q86U70* / LIM domain binding 1*ENSGALG0000000764175


Protein motifs (from Interpro)
Interpro ID Name
 IPR029005  LIM-domain binding protein/SEUSS
 IPR030174  LIM domain-binding protein 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001942 hair follicle development IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0010669 epithelial structure maintenance IEA
 biological_processGO:0030334 regulation of cell migration IEA
 biological_processGO:0035019 somatic stem cell population maintenance IEA
 biological_processGO:0043549 regulation of kinase activity IEA
 biological_processGO:0044089 positive regulation of cellular component biogenesis IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0031252 cell leading edge IEA
 molecular_functionGO:0000989 transcription factor activity, transcription factor binding IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0030274 LIM domain binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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