ENSGALG00000009192


Gallus gallus
repeatSLITRK2membranecysteine-richflankingregionc-terminaltypicalsubtypedomainsuperfamilyaxonogenesisregulationsynapseassemblyintegralcomponentreceptor-typetyrosine-proteinphosphatases

Features
Gene ID: ENSGALG00000009192
  
Biological name :SLITRK2
  
Synonyms : SLIT and NTRK like family member 2 / SLITRK2
  
Possible biological names infered from orthology : O96002 / Q810C0 / Q9H156
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 19424229
Gene end: 19426802
  
Corresponding Affymetrix probe sets: Gga.18300.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014955
NCBI entrez gene - 100857927     See in Manteia.
RefSeq - XM_420364
swissprot - F1NEZ4
Ensembl - ENSGALG00000009192
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slitrk2ENSDARG00000006636Danio rerio
 O96002ENSG00000185985Homo sapiens
 Q810C0ENSMUSG00000036790Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SLITRK5 / SLIT and NTRK like family member 5 / O94991* / Q810B7* / SLIT and NTRK-like protein 5 *ENSGALG0000002636152
SLITRK4 / SLIT and NTRK like family member 4 / Q810B8* / Q8IW52*ENSGALG0000000724242
SLITRK3 / SLIT and NTRK like family member 3 / O94933* / Q810B9* / Mus musculus SLIT and NTRK-like family, member 3 (Slitrk3), transcript variant 2, mRNA.*ENSGALG0000004215941
SLITRK6 / SLIT and NTRK like family member 6 / Q8C110* / Q9H5Y7*ENSGALG0000001690439
SLITRK1 / SLIT and NTRK like family member 1 / Q810C1* / Q96PX8*ENSGALG0000001690534
ELFN2 / extracellular leucine rich repeat and fibronectin type III domain containing 2 / Q5R3F8* / Q68FM6* / Mus musculus leucine rich repeat and fibronectin type III, extracellular 2 (Elfn...ENSGALG0000001244613
ELFN1 / extracellular leucine rich repeat and fibronectin type III domain containing 1 / P0C7U0* / Q8C8T7* / Protein ELFN1 *ENSGALG0000000420912
LRRC19 / leucine rich repeat containing 19 / Q8BZT5* / Q9H756* / Leucine-rich repeat-containing protein 19 *ENSGALG000000450289


Protein motifs (from Interpro)
Interpro ID Name
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
cellular component organizationanatomical structure developmentcellular developmental processcellular component biogenesisregulation of biological qualitycellular component organizationanatomical structure developmentcellular developmental processcellular component biogenesisregulation of biological qualitycellular component organizationanatomical structure developmentcellular developmental processcellular component biogenesisregulation of biological qualitycellular component organizationanatomical structure developmentcellular developmental processcellular component biogenesisregulation of biological qualitycellular component organizationanatomical structure developmentcellular developmental processcellular component biogenesisregulation of biological qualitycellular component organizationanatomical structure developmentcellular developmental processcellular component biogenesisregulation of biological qualitycellular component organizationanatomical structure developmentcellular developmental processcellular component biogenesisregulation of biological qualitycellular component organizationanatomical structure developmentcellular developmental processcellular component biogenesisregulation of biological qualitycellular component organizationanatomical structure developmentcellular developmental processcellular component biogenesisregulation of biological qualitycellular component organizationanatomical structure developmentcellular developmental processcellular component biogenesisregulation of biological qualitycellular component organizatcellular component organizationanatomical structure developanatomical structure developmentcellular developmental procecellular developmental processcellular component biogenesicellular component biogenesisregulation of biological quaregulation of biological quality
membranemembranemembranemembranemembranemembranemembranemembranemembranemembranemembranemembrane
TypeGO IDTermEv.Code
 biological_processGO:0007409 axonogenesis IEA
 biological_processGO:0051965 positive regulation of synapse assembly IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Receptor-type tyrosine-protein phosphatases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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