ENSGALG00000016904


Gallus gallus

Features
Gene ID: ENSGALG00000016904
  
Biological name :SLITRK6
  
Synonyms : SLIT and NTRK like family member 6 / SLITRK6
  
Possible biological names infered from orthology : Q8C110 / Q9H5Y7
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 150252601
Gene end: 150255123
  
Corresponding Affymetrix probe sets: Gga.18199.1.A1_s_at (Chicken Array)   Gga.18199.1.S1_s_at (Chicken Array)   GgaAffx.25118.1.A1_at (Chicken Array)   GgaAffx.25118.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000060355
NCBI entrez gene - 418797     See in Manteia.
RefSeq - XM_003640550
swissprot - A0A1L1RNJ0
Ensembl - ENSGALG00000016904
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slitrk6ENSDARG00000098769Danio rerio
 Q9H5Y7ENSG00000184564Homo sapiens
 Q8C110ENSMUSG00000045871Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SLITRK4 / SLIT and NTRK like family member 4 / Q810B8* / Q8IW52*ENSGALG0000000724240
SLITRK2 / SLIT and NTRK like family member 2 / O96002* / Q810C0* / Q9H156*ENSGALG0000000919240
SLITRK5 / SLIT and NTRK like family member 5 / O94991* / Q810B7* / SLIT and NTRK-like protein 5 *ENSGALG0000002636140
SLITRK3 / SLIT and NTRK like family member 3 / O94933* / Q810B9* / Mus musculus SLIT and NTRK-like family, member 3 (Slitrk3), transcript variant 2, mRNA.*ENSGALG0000004215936
SLITRK1 / SLIT and NTRK like family member 1 / Q810C1* / Q96PX8*ENSGALG0000001690531
ELFN2 / extracellular leucine rich repeat and fibronectin type III domain containing 2 / Q5R3F8* / Q68FM6* / Mus musculus leucine rich repeat and fibronectin type III, extracellular 2 (Elfn...ENSGALG0000001244614
ELFN1 / extracellular leucine rich repeat and fibronectin type III domain containing 1 / P0C7U0* / Q8C8T7* / Protein ELFN1 *ENSGALG0000000420913
LRRC19 / leucine rich repeat containing 19 / Q8BZT5* / Q9H756* / Leucine-rich repeat-containing protein 19 *ENSGALG000000450288


Protein motifs (from Interpro)
Interpro ID Name
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001964 startle response IEA
 biological_processGO:0002088 lens development in camera-type eye IEA
 biological_processGO:0002093 auditory receptor cell morphogenesis IEA
 biological_processGO:0007409 axonogenesis IEA
 biological_processGO:0007416 synapse assembly IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0008344 adult locomotory behavior IEA
 biological_processGO:0021562 vestibulocochlear nerve development IEA
 biological_processGO:0031223 auditory behavior IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0043010 camera-type eye development IEA
 biological_processGO:0048812 neuron projection morphogenesis IEA
 biological_processGO:0051965 positive regulation of synapse assembly IEA
 biological_processGO:0060005 vestibular reflex IEA
 biological_processGO:0060007 linear vestibuloocular reflex IEA
 biological_processGO:0060384 innervation IEA
 biological_processGO:0090102 cochlea development IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0071944 cell periphery IEA


Pathways (from Reactome)
Pathway description
Receptor-type tyrosine-protein phosphatases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr