ENSGALG00000012647


Gallus gallus

Features
Gene ID: ENSGALG00000012647
  
Biological name :RFX4
  
Synonyms : regulatory factor X4 / RFX4
  
Possible biological names infered from orthology : Q33E94 / Q7TNK1 / Transcription factor RFX4
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 53763373
Gene end: 53853263
  
Corresponding Affymetrix probe sets: GgaAffx.8015.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000020611
Ensembl peptide - ENSGALP00000057845
NCBI entrez gene - 418070     See in Manteia.
RefSeq - XM_004937813
swissprot - A0A1D5PXZ6
swissprot - F1NZN9
Ensembl - ENSGALG00000012647
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rfx4ENSDARG00000026395Danio rerio
 RFX4ENSG00000111783Homo sapiens
 Rfx4ENSMUSG00000020037Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RFX6 / regulatory factor X6 / Q8C7R7* / Q8HWS3* / DNA-binding protein RFX6 *ENSGALG0000001491836
RFX3 / regulatory factor X3 / P48380* / P48381* / Transcription factor RFX3 *ENSGALG0000001017926
RFX2 / regulatory factor X2 / P48378* / P48379* / DNA-binding protein RFX2 *ENSGALG0000000177325
RFX8 / RFX family member 8, lacking RFX DNA binding domain / D3YU81* / Q6ZV50* / DNA-binding protein RFX8 *ENSGALG0000004538817
RFX7 / regulatory factor X7 / Q2KHR2*ENSGALG0000004189610
RFX5 / regulatory factor X5 / P48382* / Q9JL61* / Mus musculus regulatory factor X, 5 (influences HLA class II expression) (Rfx5), transcript variant 2, mRNA.*ENSGALG000000008368


Protein motifs (from Interpro)
Interpro ID Name
 IPR003150  DNA-binding RFX-type winged-helix domain
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0021516 dorsal spinal cord development IEA
 biological_processGO:0021537 telencephalon development IEA
 biological_processGO:0021696 cerebellar cortex morphogenesis IEA
 biological_processGO:0021914 negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0030901 midbrain development IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:0070613 regulation of protein processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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