ENSGALG00000000836


Gallus gallus

Features
Gene ID: ENSGALG00000000836
  
Biological name :RFX5
  
Synonyms : regulatory factor X5 / RFX5
  
Possible biological names infered from orthology : Mus musculus regulatory factor X, 5 (influences HLA class II expression) (Rfx5), transcript variant 2, mRNA. / P48382 / Q9JL61
  
Species: Gallus gallus
  
Chr. number: 25
Strand: -1
Band:
Gene start: 2727344
Gene end: 2731219
  
Corresponding Affymetrix probe sets: Gga.11622.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000001224
NCBI entrez gene - 100857912     See in Manteia.
RefSeq - XM_015280031
RefSeq - XM_015280032
RefSeq - XM_015280033
RefSeq - XM_015280034
RefSeq - XM_015280035
RefSeq - XM_015280036
RefSeq - XM_015280037
RefSeq - XM_015280038
RefSeq - XM_003642698
swissprot - H9KYX5
Ensembl - ENSGALG00000000836
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rfx5ENSDARG00000063258Danio rerio
 RFX5ENSG00000143390Homo sapiens
 Rfx5ENSMUSG00000005774Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RFX7 / regulatory factor X7 / Q2KHR2*ENSGALG0000004189614
RFX6 / regulatory factor X6 / Q8C7R7* / Q8HWS3* / DNA-binding protein RFX6 *ENSGALG0000001491812
RFX2 / regulatory factor X2 / P48378* / P48379* / DNA-binding protein RFX2 *ENSGALG0000000177311
RFX3 / regulatory factor X3 / P48380* / P48381* / Transcription factor RFX3 *ENSGALG0000001017911
RFX4 / regulatory factor X4 / Q33E94* / Q7TNK1* / Transcription factor RFX4 *ENSGALG0000001264711
RFX8 / RFX family member 8, lacking RFX DNA binding domain / D3YU81* / Q6ZV50* / DNA-binding protein RFX8 *ENSGALG000000453887


Protein motifs (from Interpro)
Interpro ID Name
 IPR003150  DNA-binding RFX-type winged-helix domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR033486  DNA-binding protein RFX5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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