ENSDARG00000063258


Danio rerio

Features
Gene ID: ENSDARG00000063258
  
Biological name :rfx5
  
Synonyms : regulatory factor X, 5 / rfx5
  
Possible biological names infered from orthology : Mus musculus regulatory factor X, 5 (influences HLA class II expression) (Rfx5), transcript variant 2, mRNA. / P48382 / Q9JL61
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 7482784
Gene end: 7495006
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000124450
NCBI entrez gene - 101884332     See in Manteia.
swissprot - F1Q5U1
ZFIN ID - ZDB-GENE-070717-3
Ensembl - ENSDARG00000063258
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RFX5ENSGALG00000000836Gallus gallus
 RFX5ENSG00000143390Homo sapiens
 Rfx5ENSMUSG00000005774Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rfx7a / regulatory factor X7a / RFX7* / Q2KHR2* / regulatory factor X7*ENSDARG0000007723729
rfx7b / regulatory factor X7b / RFX7* / Q2KHR2* / regulatory factor X7*ENSDARG0000010369128
rfx1a / regulatory factor X, 1a (influences HLA class II expression) / RFX1* / P22670* / P48377* / regulatory factor X1* / MHC class II regulatory factor RFX1 *ENSDARG0000000588313
rfx2 / Q5EAP5 / regulatory factor X, 2 (influences HLA class II expression) / P48379* / P48378* / regulatory factor X2* / DNA-binding protein RFX2 *ENSDARG0000001357513
rfx3 / regulatory factor X, 3 (influences HLA class II expression) / P48380* / regulatory factor X3*ENSDARG0000001455012
rfx4 / A2BGA0 / regulatory factor X, 4 / Q7TNK1* / Q33E94* / Transcription factor RFX4 *ENSDARG0000002639512
rfx1b / regulatory factor X, 1b (influences HLA class II expression) / RFX1* / P22670* / P48377* / regulatory factor X1* / MHC class II regulatory factor RFX1 *ENSDARG0000007590412
rfx6 / Q5RJA1 / regulatory factor X, 6 / Q8C7R7* / Q8HWS3* / DNA-binding protein RFX6 *ENSDARG0000004170210


Protein motifs (from Interpro)
Interpro ID Name
 IPR003150  DNA-binding RFX-type winged-helix domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR033486  DNA-binding protein RFX5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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