ENSDARG00000103691


Danio rerio

Features
Gene ID: ENSDARG00000103691
  
Biological name :rfx7b
  
Synonyms : regulatory factor X7b / rfx7b
  
Possible biological names infered from orthology : Q2KHR2 / regulatory factor X7 / RFX7
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 388258
Gene end: 408173
  
Corresponding Affymetrix probe sets: Dr.13543.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000133236
NCBI entrez gene - 100538179     See in Manteia.
swissprot - A0A0G2KLK6
ZFIN ID - ZDB-GENE-170623-1
Ensembl - ENSDARG00000103691
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RFX7ENSGALG00000041896Gallus gallus
 RFX7ENSG00000181827Homo sapiens
 Rfx7ENSMUSG00000037674Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rfx7a / regulatory factor X7a / RFX7* / Q2KHR2* / regulatory factor X7*ENSDARG0000007723757
rfx5 / regulatory factor X, 5 / P48382* / Q9JL61* / Mus musculus regulatory factor X, 5 (influences HLA class II expression) (Rfx5), transcript variant 2, mRNA.*ENSDARG0000006325811
rfx1a / regulatory factor X, 1a (influences HLA class II expression) / RFX1* / P22670* / P48377* / regulatory factor X1* / MHC class II regulatory factor RFX1 *ENSDARG000000058837
rfx2 / Q5EAP5 / regulatory factor X, 2 (influences HLA class II expression) / P48379* / P48378* / regulatory factor X2* / DNA-binding protein RFX2 *ENSDARG000000135757
rfx3 / regulatory factor X, 3 (influences HLA class II expression) / P48380* / regulatory factor X3*ENSDARG000000145507
rfx4 / A2BGA0 / regulatory factor X, 4 / Q7TNK1* / Q33E94* / Transcription factor RFX4 *ENSDARG000000263957
rfx6 / Q5RJA1 / regulatory factor X, 6 / Q8C7R7* / Q8HWS3* / DNA-binding protein RFX6 *ENSDARG000000417027
rfx1b / regulatory factor X, 1b (influences HLA class II expression) / RFX1* / P22670* / P48377* / regulatory factor X1* / MHC class II regulatory factor RFX1 *ENSDARG000000759047


Protein motifs (from Interpro)
Interpro ID Name
 IPR003150  DNA-binding RFX-type winged-helix domain
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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