ENSDARG00000075904


Danio rerio

Features
Gene ID: ENSDARG00000075904
  
Biological name :rfx1b
  
Synonyms : regulatory factor X, 1b (influences HLA class II expression) / rfx1b
  
Possible biological names infered from orthology : MHC class II regulatory factor RFX1 / P22670 / P48377 / regulatory factor X1 / RFX1
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 54088563
Gene end: 54107321
  
Corresponding Affymetrix probe sets: Dr.23832.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000124460
Ensembl peptide - ENSDARP00000125409
Ensembl peptide - ENSDARP00000148178
swissprot - F8W388
swissprot - H0WEX9
ZFIN ID - ZDB-GENE-041008-101
Ensembl - ENSDARG00000075904
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RFX1ENSG00000132005Homo sapiens
 Rfx1ENSMUSG00000031706Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rfx1a / regulatory factor X, 1a (influences HLA class II expression) / RFX1* / P22670* / P48377* / regulatory factor X1* / MHC class II regulatory factor RFX1 *ENSDARG0000000588365
rfx3 / regulatory factor X, 3 (influences HLA class II expression) / P48380* / regulatory factor X3*ENSDARG0000001455046
rfx2 / Q5EAP5 / regulatory factor X, 2 (influences HLA class II expression) / P48379* / P48378* / regulatory factor X2* / DNA-binding protein RFX2 *ENSDARG0000001357544
rfx6 / Q5RJA1 / regulatory factor X, 6 / Q8C7R7* / Q8HWS3* / DNA-binding protein RFX6 *ENSDARG0000004170222
rfx4 / A2BGA0 / regulatory factor X, 4 / Q7TNK1* / Q33E94* / Transcription factor RFX4 *ENSDARG0000002639521
rfx7a / regulatory factor X7a / RFX7* / Q2KHR2* / regulatory factor X7*ENSDARG0000007723712
rfx7b / regulatory factor X7b / RFX7* / Q2KHR2* / regulatory factor X7*ENSDARG0000010369112
rfx5 / regulatory factor X, 5 / P48382* / Q9JL61* / Mus musculus regulatory factor X, 5 (influences HLA class II expression) (Rfx5), transcript variant 2, mRNA.*ENSDARG000000632589


Protein motifs (from Interpro)
Interpro ID Name
 IPR003150  DNA-binding RFX-type winged-helix domain
 IPR007668  RFX1 transcription activation region
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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